miRNA display CGI


Results 1 - 20 of 111 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28770 5' -55.9 NC_006146.1 + 170394 0.77 0.343203
Target:  5'- cGGGCCUCccCugGGGGCCUCGGgGGCg -3'
miRNA:   3'- -UUUGGAGaaGugCUCCGGGGCCaUCG- -5'
28770 5' -55.9 NC_006146.1 + 170216 0.71 0.661138
Target:  5'- gGGGCCag--CGCGGGGUCCCGG-GGCg -3'
miRNA:   3'- -UUUGGagaaGUGCUCCGGGGCCaUCG- -5'
28770 5' -55.9 NC_006146.1 + 169980 0.68 0.848526
Target:  5'- gAGGCCggcgCgcgCcCGGGGUCCCGGggGGCg -3'
miRNA:   3'- -UUUGGa---Gaa-GuGCUCCGGGGCCa-UCG- -5'
28770 5' -55.9 NC_006146.1 + 169463 0.77 0.343203
Target:  5'- cGGGCCUCccCugGGGGCCUCGGgGGCg -3'
miRNA:   3'- -UUUGGAGaaGugCUCCGGGGCCaUCG- -5'
28770 5' -55.9 NC_006146.1 + 169285 0.71 0.661138
Target:  5'- gGGGCCag--CGCGGGGUCCCGG-GGCg -3'
miRNA:   3'- -UUUGGagaaGUGCUCCGGGGCCaUCG- -5'
28770 5' -55.9 NC_006146.1 + 169048 0.68 0.848526
Target:  5'- gAGGCCggcgCgcgCcCGGGGUCCCGGggGGCg -3'
miRNA:   3'- -UUUGGa---Gaa-GuGCUCCGGGGCCa-UCG- -5'
28770 5' -55.9 NC_006146.1 + 168531 0.77 0.343203
Target:  5'- cGGGCCUCccCugGGGGCCUCGGgGGCg -3'
miRNA:   3'- -UUUGGAGaaGugCUCCGGGGCCaUCG- -5'
28770 5' -55.9 NC_006146.1 + 168353 0.71 0.661138
Target:  5'- gGGGCCag--CGCGGGGUCCCGG-GGCg -3'
miRNA:   3'- -UUUGGagaaGUGCUCCGGGGCCaUCG- -5'
28770 5' -55.9 NC_006146.1 + 168152 0.66 0.922909
Target:  5'- uGGGCCU----GCGAGGgCCgGGUAGUa -3'
miRNA:   3'- -UUUGGAgaagUGCUCCgGGgCCAUCG- -5'
28770 5' -55.9 NC_006146.1 + 168116 0.68 0.848526
Target:  5'- gAGGCCggcgCgcgCcCGGGGUCCCGGggGGCg -3'
miRNA:   3'- -UUUGGa---Gaa-GuGCUCCGGGGCCa-UCG- -5'
28770 5' -55.9 NC_006146.1 + 167599 0.77 0.343203
Target:  5'- cGGGCCUCccCugGGGGCCUCGGgGGCg -3'
miRNA:   3'- -UUUGGAGaaGugCUCCGGGGCCaUCG- -5'
28770 5' -55.9 NC_006146.1 + 167421 0.71 0.661138
Target:  5'- gGGGCCag--CGCGGGGUCCCGG-GGCg -3'
miRNA:   3'- -UUUGGagaaGUGCUCCGGGGCCaUCG- -5'
28770 5' -55.9 NC_006146.1 + 167184 0.68 0.848526
Target:  5'- gAGGCCggcgCgcgCcCGGGGUCCCGGggGGCg -3'
miRNA:   3'- -UUUGGa---Gaa-GuGCUCCGGGGCCa-UCG- -5'
28770 5' -55.9 NC_006146.1 + 162376 0.68 0.823824
Target:  5'- gGAGCCcCUUgGCGcgcccgcgcccGGGaCCCCGGUGGg -3'
miRNA:   3'- -UUUGGaGAAgUGC-----------UCC-GGGGCCAUCg -5'
28770 5' -55.9 NC_006146.1 + 159394 0.67 0.885698
Target:  5'- cAGGCCgcgCUguccacgaUCAUGAcGGCCCCcgaguccgGGUGGCu -3'
miRNA:   3'- -UUUGGa--GA--------AGUGCU-CCGGGG--------CCAUCG- -5'
28770 5' -55.9 NC_006146.1 + 157521 0.66 0.922909
Target:  5'- --uCCUCUggACuaGGGGCCCUGGgccccgagGGCg -3'
miRNA:   3'- uuuGGAGAagUG--CUCCGGGGCCa-------UCG- -5'
28770 5' -55.9 NC_006146.1 + 156911 0.71 0.65093
Target:  5'- cAGCC-CggC-CGAGGCCUgGGUGGCg -3'
miRNA:   3'- uUUGGaGaaGuGCUCCGGGgCCAUCG- -5'
28770 5' -55.9 NC_006146.1 + 156643 0.72 0.640706
Target:  5'- uGGGCCUCUUCcuCGAGGaCCCCuGGacgugugGGCg -3'
miRNA:   3'- -UUUGGAGAAGu-GCUCC-GGGG-CCa------UCG- -5'
28770 5' -55.9 NC_006146.1 + 155860 0.69 0.757622
Target:  5'- -uACCUCUggcccgagacCugGGGGCCcgggccuggaagguCCGGUGGCu -3'
miRNA:   3'- uuUGGAGAa---------GugCUCCGG--------------GGCCAUCG- -5'
28770 5' -55.9 NC_006146.1 + 155679 0.67 0.864026
Target:  5'- --uCCUCUUC-UGAGGauggCCCGGUAcuGCg -3'
miRNA:   3'- uuuGGAGAAGuGCUCCg---GGGCCAU--CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.