miRNA display CGI


Results 41 - 60 of 111 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28770 5' -55.9 NC_006146.1 + 1476 0.67 0.864026
Target:  5'- cGGCCUCUcCGCG-GGCCUCcacacGUGGCc -3'
miRNA:   3'- uUUGGAGAaGUGCuCCGGGGc----CAUCG- -5'
28770 5' -55.9 NC_006146.1 + 44493 0.67 0.856378
Target:  5'- -cAUCUCgUUCGCggagagggcgcaGAGGCCCCuGGUGGg -3'
miRNA:   3'- uuUGGAG-AAGUG------------CUCCGGGG-CCAUCg -5'
28770 5' -55.9 NC_006146.1 + 167184 0.68 0.848526
Target:  5'- gAGGCCggcgCgcgCcCGGGGUCCCGGggGGCg -3'
miRNA:   3'- -UUUGGa---Gaa-GuGCUCCGGGGCCa-UCG- -5'
28770 5' -55.9 NC_006146.1 + 169048 0.68 0.848526
Target:  5'- gAGGCCggcgCgcgCcCGGGGUCCCGGggGGCg -3'
miRNA:   3'- -UUUGGa---Gaa-GuGCUCCGGGGCCa-UCG- -5'
28770 5' -55.9 NC_006146.1 + 47746 0.68 0.848526
Target:  5'- gGGGCCUCcUCGCGc-GCCCUGGcgAGUa -3'
miRNA:   3'- -UUUGGAGaAGUGCucCGGGGCCa-UCG- -5'
28770 5' -55.9 NC_006146.1 + 169980 0.68 0.848526
Target:  5'- gAGGCCggcgCgcgCcCGGGGUCCCGGggGGCg -3'
miRNA:   3'- -UUUGGa---Gaa-GuGCUCCGGGGCCa-UCG- -5'
28770 5' -55.9 NC_006146.1 + 168116 0.68 0.848526
Target:  5'- gAGGCCggcgCgcgCcCGGGGUCCCGGggGGCg -3'
miRNA:   3'- -UUUGGa---Gaa-GuGCUCCGGGGCCa-UCG- -5'
28770 5' -55.9 NC_006146.1 + 76733 0.68 0.848526
Target:  5'- gAGGCCgacagCUUCgugGAGGCCCaCGGgcacgAGCa -3'
miRNA:   3'- -UUUGGa----GAAGug-CUCCGGG-GCCa----UCG- -5'
28770 5' -55.9 NC_006146.1 + 117654 0.68 0.840479
Target:  5'- --uCUUgUUCACGAuccaGGCCuccaCCGGUAGCu -3'
miRNA:   3'- uuuGGAgAAGUGCU----CCGG----GGCCAUCG- -5'
28770 5' -55.9 NC_006146.1 + 48565 0.68 0.840479
Target:  5'- cGACCUUggaaUCAucCGGGGCCUCGGgGGUc -3'
miRNA:   3'- uUUGGAGa---AGU--GCUCCGGGGCCaUCG- -5'
28770 5' -55.9 NC_006146.1 + 121337 0.68 0.840479
Target:  5'- uGGCCUCagCGCuGGGCCUCaGUGGUg -3'
miRNA:   3'- uUUGGAGaaGUGcUCCGGGGcCAUCG- -5'
28770 5' -55.9 NC_006146.1 + 95926 0.68 0.835559
Target:  5'- uGGCCccgCUUCugGAcucuguacuGGCCCCGGUucuggacucuguacuGGCc -3'
miRNA:   3'- uUUGGa--GAAGugCU---------CCGGGGCCA---------------UCG- -5'
28770 5' -55.9 NC_006146.1 + 155560 0.68 0.832242
Target:  5'- gGAGCCgggCUcgCGCGGGGCgCCCGccaggGGCa -3'
miRNA:   3'- -UUUGGa--GAa-GUGCUCCG-GGGCca---UCG- -5'
28770 5' -55.9 NC_006146.1 + 28079 0.68 0.832242
Target:  5'- uGGGCUUCggggcaUUCuuGAGGCCCgGGUGGg -3'
miRNA:   3'- -UUUGGAG------AAGugCUCCGGGgCCAUCg -5'
28770 5' -55.9 NC_006146.1 + 162376 0.68 0.823824
Target:  5'- gGAGCCcCUUgGCGcgcccgcgcccGGGaCCCCGGUGGg -3'
miRNA:   3'- -UUUGGaGAAgUGC-----------UCC-GGGGCCAUCg -5'
28770 5' -55.9 NC_006146.1 + 89365 0.68 0.815231
Target:  5'- ---aCUCUUC-CGAGGCCCgaGGUcucguggugGGCa -3'
miRNA:   3'- uuugGAGAAGuGCUCCGGGg-CCA---------UCG- -5'
28770 5' -55.9 NC_006146.1 + 116449 0.68 0.815231
Target:  5'- uGGACgCggUUCGCGAGGUCUCGGgcGUa -3'
miRNA:   3'- -UUUG-GagAAGUGCUCCGGGGCCauCG- -5'
28770 5' -55.9 NC_006146.1 + 51914 0.69 0.779283
Target:  5'- gGGGCCUCcgaggCAcCGAcgggcGGCCCCGGU-GCg -3'
miRNA:   3'- -UUUGGAGaa---GU-GCU-----CCGGGGCCAuCG- -5'
28770 5' -55.9 NC_006146.1 + 23457 0.69 0.779283
Target:  5'- --gUCUCggccUACGAGGCCCUGGccgUGGCc -3'
miRNA:   3'- uuuGGAGaa--GUGCUCCGGGGCC---AUCG- -5'
28770 5' -55.9 NC_006146.1 + 42640 0.69 0.779283
Target:  5'- -cGCCgugggCcUCACGuaguGGGCCCagaGGUAGCg -3'
miRNA:   3'- uuUGGa----GaAGUGC----UCCGGGg--CCAUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.