miRNA display CGI


Results 21 - 40 of 111 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28770 5' -55.9 NC_006146.1 + 125301 0.66 0.917295
Target:  5'- uGAGCCcgagauguccgUCUUCGCGAGGCaggCCGccUGGCu -3'
miRNA:   3'- -UUUGG-----------AGAAGUGCUCCGg--GGCc-AUCG- -5'
28770 5' -55.9 NC_006146.1 + 108519 0.66 0.915564
Target:  5'- uAACCUUacccCAggcCGAGGCCCCguccucguacagcgGGUGGCu -3'
miRNA:   3'- uUUGGAGaa--GU---GCUCCGGGG--------------CCAUCG- -5'
28770 5' -55.9 NC_006146.1 + 132713 0.66 0.911443
Target:  5'- uGGGCC-CUUCACGAugcccGGuguCCCCaGUAGCc -3'
miRNA:   3'- -UUUGGaGAAGUGCU-----CC---GGGGcCAUCG- -5'
28770 5' -55.9 NC_006146.1 + 153506 0.66 0.911443
Target:  5'- -uGCCgugCUUCugGAGGCUgUGGauggAGUg -3'
miRNA:   3'- uuUGGa--GAAGugCUCCGGgGCCa---UCG- -5'
28770 5' -55.9 NC_006146.1 + 27319 0.66 0.899033
Target:  5'- -uGCCUgCUUCAacuGGCCCUccaaaaacagcgGGUGGCg -3'
miRNA:   3'- uuUGGA-GAAGUgcuCCGGGG------------CCAUCG- -5'
28770 5' -55.9 NC_006146.1 + 4202 0.67 0.891811
Target:  5'- gGAACCggCUUCAUGAcggugguggucacGGCCUCGGcacGCg -3'
miRNA:   3'- -UUUGGa-GAAGUGCU-------------CCGGGGCCau-CG- -5'
28770 5' -55.9 NC_006146.1 + 159394 0.67 0.885698
Target:  5'- cAGGCCgcgCUguccacgaUCAUGAcGGCCCCcgaguccgGGUGGCu -3'
miRNA:   3'- -UUUGGa--GA--------AGUGCU-CCGGGG--------CCAUCG- -5'
28770 5' -55.9 NC_006146.1 + 122321 0.67 0.884314
Target:  5'- uGGCCUCccugaccccCGAGGCCCCGGa--- -3'
miRNA:   3'- uUUGGAGaagu-----GCUCCGGGGCCaucg -5'
28770 5' -55.9 NC_006146.1 + 30486 0.67 0.878692
Target:  5'- gGAACCUCUUCcugccaACG-GGCCCCaacacagAGCu -3'
miRNA:   3'- -UUUGGAGAAG------UGCuCCGGGGcca----UCG- -5'
28770 5' -55.9 NC_006146.1 + 57639 0.67 0.878692
Target:  5'- gAGAUCUgcCUUCAcuuacCGAGGCuccagucuCCCGGUGGUg -3'
miRNA:   3'- -UUUGGA--GAAGU-----GCUCCG--------GGGCCAUCG- -5'
28770 5' -55.9 NC_006146.1 + 71063 0.67 0.878692
Target:  5'- gGGACgUCUUCAccuauuccacCGAGGCCCCGa---- -3'
miRNA:   3'- -UUUGgAGAAGU----------GCUCCGGGGCcaucg -5'
28770 5' -55.9 NC_006146.1 + 138885 0.67 0.871466
Target:  5'- -cGCCUCgUCcCGAGGCCCCucuguccuccUAGCg -3'
miRNA:   3'- uuUGGAGaAGuGCUCCGGGGcc--------AUCG- -5'
28770 5' -55.9 NC_006146.1 + 130579 0.67 0.871466
Target:  5'- aAGACCUC-UCGuugaaccccacCGAGGCCCCGaccGCu -3'
miRNA:   3'- -UUUGGAGaAGU-----------GCUCCGGGGCcauCG- -5'
28770 5' -55.9 NC_006146.1 + 3340 0.67 0.864026
Target:  5'- cGGCCUCUcCGCG-GGCCUCcacacGUGGCc -3'
miRNA:   3'- uUUGGAGAaGUGCuCCGGGGc----CAUCG- -5'
28770 5' -55.9 NC_006146.1 + 146631 0.67 0.864026
Target:  5'- cGGCCagggUCACGAGGCCUgGGUccauGGUc -3'
miRNA:   3'- uUUGGaga-AGUGCUCCGGGgCCA----UCG- -5'
28770 5' -55.9 NC_006146.1 + 47526 0.67 0.864026
Target:  5'- cAGCCaggUUGCGGGGcCCCCGGccAGCg -3'
miRNA:   3'- uUUGGagaAGUGCUCC-GGGGCCa-UCG- -5'
28770 5' -55.9 NC_006146.1 + 2408 0.67 0.864026
Target:  5'- cGGCCUCUcCGCG-GGCCUCcacacGUGGCc -3'
miRNA:   3'- uUUGGAGAaGUGCuCCGGGGc----CAUCG- -5'
28770 5' -55.9 NC_006146.1 + 155679 0.67 0.864026
Target:  5'- --uCCUCUUC-UGAGGauggCCCGGUAcuGCg -3'
miRNA:   3'- uuuGGAGAAGuGCUCCg---GGGCCAU--CG- -5'
28770 5' -55.9 NC_006146.1 + 115481 0.67 0.864026
Target:  5'- cGggUCUCa--ACGAGGCCgCGGcgGGCg -3'
miRNA:   3'- -UuuGGAGaagUGCUCCGGgGCCa-UCG- -5'
28770 5' -55.9 NC_006146.1 + 545 0.67 0.864026
Target:  5'- cGGCCUCUcCGCG-GGCCUCcacacGUGGCc -3'
miRNA:   3'- uUUGGAGAaGUGCuCCGGGGc----CAUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.