miRNA display CGI


Results 41 - 60 of 312 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28771 3' -59 NC_006146.1 + 124978 0.66 0.816858
Target:  5'- aCCCCguccaccuacgGCAcGGUCACCGGCCgggcgcugagaaaucUCAUGCc -3'
miRNA:   3'- gGGGG-----------CGUuCUGGUGGCCGG---------------AGUACG- -5'
28771 3' -59 NC_006146.1 + 38141 0.66 0.813507
Target:  5'- aCCgUGCGGGACCG-CGGCaUCcgGCc -3'
miRNA:   3'- gGGgGCGUUCUGGUgGCCGgAGuaCG- -5'
28771 3' -59 NC_006146.1 + 808 0.66 0.813507
Target:  5'- cCCCCUGCGGcgccGGCCccucccGCCGGCCaucccCAcGCg -3'
miRNA:   3'- -GGGGGCGUU----CUGG------UGGCCGGa----GUaCG- -5'
28771 3' -59 NC_006146.1 + 123887 0.66 0.813507
Target:  5'- gCgCCCGCGAGuCCgACCGgGCCgc-UGCc -3'
miRNA:   3'- -GgGGGCGUUCuGG-UGGC-CGGaguACG- -5'
28771 3' -59 NC_006146.1 + 123385 0.66 0.813506
Target:  5'- gCCCCCGaCAcuGCCGcuguaguccCCGGCCUUggGg -3'
miRNA:   3'- -GGGGGC-GUucUGGU---------GGCCGGAGuaCg -5'
28771 3' -59 NC_006146.1 + 93996 0.66 0.813506
Target:  5'- gCCCCGCGGucACCuCUGGCUcccaCGUGCg -3'
miRNA:   3'- gGGGGCGUUc-UGGuGGCCGGa---GUACG- -5'
28771 3' -59 NC_006146.1 + 144658 0.66 0.813506
Target:  5'- gCCCCCaCcucuGGCCAauuUUGGCCUCgGUGCu -3'
miRNA:   3'- -GGGGGcGuu--CUGGU---GGCCGGAG-UACG- -5'
28771 3' -59 NC_006146.1 + 33241 0.66 0.813506
Target:  5'- gCCgCCgGCGGGuCCGCCGgGCCgc-UGCc -3'
miRNA:   3'- -GG-GGgCGUUCuGGUGGC-CGGaguACG- -5'
28771 3' -59 NC_006146.1 + 164256 0.66 0.813506
Target:  5'- -gCCUGguGGGCCACCucCCUCGuUGCu -3'
miRNA:   3'- ggGGGCguUCUGGUGGccGGAGU-ACG- -5'
28771 3' -59 NC_006146.1 + 98552 0.66 0.813506
Target:  5'- gCCagCCGgucCAGGGCCcaaGCgaaGGCCUCAUGCc -3'
miRNA:   3'- -GGg-GGC---GUUCUGG---UGg--CCGGAGUACG- -5'
28771 3' -59 NC_006146.1 + 4952 0.66 0.812665
Target:  5'- gCCCCGgggaccaGGGGCCACgagagccuccuggCGGCCUCAcuaacgcggggUGCc -3'
miRNA:   3'- gGGGGCg------UUCUGGUG-------------GCCGGAGU-----------ACG- -5'
28771 3' -59 NC_006146.1 + 112308 0.66 0.812665
Target:  5'- gCCCCCGU-AGAUguauuggCGCUGGUCU-GUGCa -3'
miRNA:   3'- -GGGGGCGuUCUG-------GUGGCCGGAgUACG- -5'
28771 3' -59 NC_006146.1 + 66712 0.66 0.805022
Target:  5'- gCCCCGUggGGgCGCagaCGGCC-C-UGCg -3'
miRNA:   3'- gGGGGCGuuCUgGUG---GCCGGaGuACG- -5'
28771 3' -59 NC_006146.1 + 76104 0.66 0.805022
Target:  5'- aCCCCCG---GGCC-UCGGCCUaCGUGg -3'
miRNA:   3'- -GGGGGCguuCUGGuGGCCGGA-GUACg -5'
28771 3' -59 NC_006146.1 + 95269 0.66 0.805022
Target:  5'- gCCUCUGCAAG-CUAUaUGGCCUuCGUGUc -3'
miRNA:   3'- -GGGGGCGUUCuGGUG-GCCGGA-GUACG- -5'
28771 3' -59 NC_006146.1 + 125554 0.66 0.805022
Target:  5'- cCUCCCGUu-GGgUACCGGCCUCc--- -3'
miRNA:   3'- -GGGGGCGuuCUgGUGGCCGGAGuacg -5'
28771 3' -59 NC_006146.1 + 144732 0.66 0.805022
Target:  5'- aCgCUgGCAcaccGGGCCGCCGGggucCCUCcgGCc -3'
miRNA:   3'- -GgGGgCGU----UCUGGUGGCC----GGAGuaCG- -5'
28771 3' -59 NC_006146.1 + 147810 0.66 0.805022
Target:  5'- aCgCUgGCAcaccGGGCCGCCGGggucCCUCcgGCc -3'
miRNA:   3'- -GgGGgCGU----UCUGGUGGCC----GGAGuaCG- -5'
28771 3' -59 NC_006146.1 + 141655 0.66 0.805022
Target:  5'- aCgCUgGCAcaccGGGCCGCCGGggucCCUCcgGCc -3'
miRNA:   3'- -GgGGgCGU----UCUGGUGGCC----GGAGuaCG- -5'
28771 3' -59 NC_006146.1 + 157044 0.66 0.805022
Target:  5'- aCgCUgGCAcaccGGGCCGCCGGggucCCUCcgGCc -3'
miRNA:   3'- -GgGGgCGU----UCUGGUGGCC----GGAGuaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.