miRNA display CGI


Results 21 - 40 of 136 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28771 5' -58.8 NC_006146.1 + 169363 0.7 0.603473
Target:  5'- uGGCGGGGGAgAGggggcagggcUGGCG-CCGGGc- -3'
miRNA:   3'- uCCGUCCCCUgUU----------ACCGCaGGUCCuc -5'
28771 5' -58.8 NC_006146.1 + 98330 0.7 0.602473
Target:  5'- uGGCAcGGGGCcg-GGCGcggcccgucccggUCCAGGAGa -3'
miRNA:   3'- uCCGUcCCCUGuuaCCGC-------------AGGUCCUC- -5'
28771 5' -58.8 NC_006146.1 + 168372 0.71 0.534336
Target:  5'- gGGGCGGGGGGuCGGgcgGGCaugcUCCGGGGu -3'
miRNA:   3'- -UCCGUCCCCU-GUUa--CCGc---AGGUCCUc -5'
28771 5' -58.8 NC_006146.1 + 113702 0.73 0.432349
Target:  5'- cGGCccGGGGACGGcGGCGgcagCCGGGAc -3'
miRNA:   3'- uCCGu-CCCCUGUUaCCGCa---GGUCCUc -5'
28771 5' -58.8 NC_006146.1 + 71872 0.68 0.700323
Target:  5'- aGGGguGGuGGACAcugagguggggcugGUGGCGU-UAGGGGu -3'
miRNA:   3'- -UCCguCC-CCUGU--------------UACCGCAgGUCCUC- -5'
28771 5' -58.8 NC_006146.1 + 137891 0.69 0.633535
Target:  5'- cGGCAGGGGguccccguggACAGggccgGGgGuUCCGGGGGc -3'
miRNA:   3'- uCCGUCCCC----------UGUUa----CCgC-AGGUCCUC- -5'
28771 5' -58.8 NC_006146.1 + 170175 0.7 0.553861
Target:  5'- gGGGCugAGGGGGCucccgagGGCGgggCCGGGGc -3'
miRNA:   3'- -UCCG--UCCCCUGuua----CCGCa--GGUCCUc -5'
28771 5' -58.8 NC_006146.1 + 63247 0.73 0.432349
Target:  5'- -uGUAuGGGGCAAUGGCcUCCGGGGGg -3'
miRNA:   3'- ucCGUcCCCUGUUACCGcAGGUCCUC- -5'
28771 5' -58.8 NC_006146.1 + 53953 0.69 0.633535
Target:  5'- -cGCAGGGGcuCAcgGGCGUUuucccaCAGGGGg -3'
miRNA:   3'- ucCGUCCCCu-GUuaCCGCAG------GUCCUC- -5'
28771 5' -58.8 NC_006146.1 + 145407 0.74 0.373661
Target:  5'- gGGGUAGGGGuuguagcggaagGCAAUGaucacguCGUCCAGGAGu -3'
miRNA:   3'- -UCCGUCCCC------------UGUUACc------GCAGGUCCUC- -5'
28771 5' -58.8 NC_006146.1 + 146021 0.7 0.573593
Target:  5'- gGGGCAgGGGGGCAGcuccuggcacUGcGCGUCCAGc-- -3'
miRNA:   3'- -UCCGU-CCCCUGUU----------AC-CGCAGGUCcuc -5'
28771 5' -58.8 NC_006146.1 + 170294 0.7 0.603473
Target:  5'- uGGCGGGGGAgAGggggcagggcUGGCG-CCGGGc- -3'
miRNA:   3'- uCCGUCCCCUgUU----------ACCGCaGGUCCuc -5'
28771 5' -58.8 NC_006146.1 + 167380 0.7 0.553861
Target:  5'- gGGGCugAGGGGGCucccgagGGCGgggCCGGGGc -3'
miRNA:   3'- -UCCG--UCCCCUGuua----CCGCa--GGUCCUc -5'
28771 5' -58.8 NC_006146.1 + 169304 0.71 0.534336
Target:  5'- gGGGCGGGGGGuCGGgcgGGCaugcUCCGGGGu -3'
miRNA:   3'- -UCCGUCCCCU-GUUa--CCGc---AGGUCCUc -5'
28771 5' -58.8 NC_006146.1 + 51478 0.72 0.477407
Target:  5'- uGGGCGGGGG-CugcGGCGU-CGGGAGu -3'
miRNA:   3'- -UCCGUCCCCuGuuaCCGCAgGUCCUC- -5'
28771 5' -58.8 NC_006146.1 + 69578 0.72 0.441164
Target:  5'- uGGUGGGGGAaGAUGGCcagGUCCuGGGGc -3'
miRNA:   3'- uCCGUCCCCUgUUACCG---CAGGuCCUC- -5'
28771 5' -58.8 NC_006146.1 + 109352 0.68 0.713074
Target:  5'- cGGGguGGGGaauagacaGCGAgGGCGUCCcccGGAc -3'
miRNA:   3'- -UCCguCCCC--------UGUUaCCGCAGGu--CCUc -5'
28771 5' -58.8 NC_006146.1 + 90183 0.68 0.713074
Target:  5'- cGGCAGGGGA----GGUaGUgCAGGGGg -3'
miRNA:   3'- uCCGUCCCCUguuaCCG-CAgGUCCUC- -5'
28771 5' -58.8 NC_006146.1 + 60893 0.68 0.683512
Target:  5'- cGGCcuGGGGccCAGUGGa-UCCAGGAGc -3'
miRNA:   3'- uCCGu-CCCCu-GUUACCgcAGGUCCUC- -5'
28771 5' -58.8 NC_006146.1 + 170668 0.69 0.643563
Target:  5'- cGGcGCGGGGGAggcCAggGGCGcCCcGGGGa -3'
miRNA:   3'- -UC-CGUCCCCU---GUuaCCGCaGGuCCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.