miRNA display CGI


Results 1 - 20 of 136 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28771 5' -58.8 NC_006146.1 + 68174 0.76 0.272788
Target:  5'- cGGGCAGGcgcagcgucaGGACGcgGGCGcagcggcUCCGGGAGg -3'
miRNA:   3'- -UCCGUCC----------CCUGUuaCCGC-------AGGUCCUC- -5'
28771 5' -58.8 NC_006146.1 + 170175 0.7 0.553861
Target:  5'- gGGGCugAGGGGGCucccgagGGCGgggCCGGGGc -3'
miRNA:   3'- -UCCG--UCCCCUGuua----CCGCa--GGUCCUc -5'
28771 5' -58.8 NC_006146.1 + 98330 0.7 0.602473
Target:  5'- uGGCAcGGGGCcg-GGCGcggcccgucccggUCCAGGAGa -3'
miRNA:   3'- uCCGUcCCCUGuuaCCGC-------------AGGUCCUC- -5'
28771 5' -58.8 NC_006146.1 + 157885 0.66 0.82303
Target:  5'- cAGGUAGaGGcuCGAgagcuUGGUGUCCGGGAa -3'
miRNA:   3'- -UCCGUC-CCcuGUU-----ACCGCAGGUCCUc -5'
28771 5' -58.8 NC_006146.1 + 69578 0.72 0.441164
Target:  5'- uGGUGGGGGAaGAUGGCcagGUCCuGGGGc -3'
miRNA:   3'- uCCGUCCCCUgUUACCG---CAGGuCCUC- -5'
28771 5' -58.8 NC_006146.1 + 101254 0.72 0.45008
Target:  5'- uGGUGGGGGAC-AUGGUG-CUGGGGGc -3'
miRNA:   3'- uCCGUCCCCUGuUACCGCaGGUCCUC- -5'
28771 5' -58.8 NC_006146.1 + 51478 0.72 0.477407
Target:  5'- uGGGCGGGGG-CugcGGCGU-CGGGAGu -3'
miRNA:   3'- -UCCGUCCCCuGuuaCCGCAgGUCCUC- -5'
28771 5' -58.8 NC_006146.1 + 166741 0.71 0.528525
Target:  5'- uGGGCAuGGGuuucggacgggaccaGCAGUGGCGaggggaCCAGGAGg -3'
miRNA:   3'- -UCCGUcCCC---------------UGUUACCGCa-----GGUCCUC- -5'
28771 5' -58.8 NC_006146.1 + 169304 0.71 0.534336
Target:  5'- gGGGCGGGGGGuCGGgcgGGCaugcUCCGGGGu -3'
miRNA:   3'- -UCCGUCCCCU-GUUa--CCGc---AGGUCCUc -5'
28771 5' -58.8 NC_006146.1 + 169244 0.7 0.553861
Target:  5'- gGGGCugAGGGGGCucccgagGGCGgggCCGGGGc -3'
miRNA:   3'- -UCCG--UCCCCUGuua----CCGCa--GGUCCUc -5'
28771 5' -58.8 NC_006146.1 + 64417 0.71 0.534336
Target:  5'- uAGGCcGGGGccACGGcGGCGUacgcugCCAGGAGa -3'
miRNA:   3'- -UCCGuCCCC--UGUUaCCGCA------GGUCCUC- -5'
28771 5' -58.8 NC_006146.1 + 168372 0.71 0.534336
Target:  5'- gGGGCGGGGGGuCGGgcgGGCaugcUCCGGGGu -3'
miRNA:   3'- -UCCGUCCCCU-GUUa--CCGc---AGGUCCUc -5'
28771 5' -58.8 NC_006146.1 + 145407 0.74 0.373661
Target:  5'- gGGGUAGGGGuuguagcggaagGCAAUGaucacguCGUCCAGGAGu -3'
miRNA:   3'- -UCCGUCCCC------------UGUUACc------GCAGGUCCUC- -5'
28771 5' -58.8 NC_006146.1 + 167380 0.7 0.553861
Target:  5'- gGGGCugAGGGGGCucccgagGGCGgggCCGGGGc -3'
miRNA:   3'- -UCCG--UCCCCUGuua----CCGCa--GGUCCUc -5'
28771 5' -58.8 NC_006146.1 + 63247 0.73 0.432349
Target:  5'- -uGUAuGGGGCAAUGGCcUCCGGGGGg -3'
miRNA:   3'- ucCGUcCCCUGUUACCGcAGGUCCUC- -5'
28771 5' -58.8 NC_006146.1 + 167440 0.71 0.534336
Target:  5'- gGGGCGGGGGGuCGGgcgGGCaugcUCCGGGGu -3'
miRNA:   3'- -UCCGUCCCCU-GUUa--CCGc---AGGUCCUc -5'
28771 5' -58.8 NC_006146.1 + 168312 0.7 0.553861
Target:  5'- gGGGCugAGGGGGCucccgagGGCGgggCCGGGGc -3'
miRNA:   3'- -UCCG--UCCCCUGuua----CCGCa--GGUCCUc -5'
28771 5' -58.8 NC_006146.1 + 146021 0.7 0.573593
Target:  5'- gGGGCAgGGGGGCAGcuccuggcacUGcGCGUCCAGc-- -3'
miRNA:   3'- -UCCGU-CCCCUGUU----------AC-CGCAGGUCcuc -5'
28771 5' -58.8 NC_006146.1 + 113702 0.73 0.432349
Target:  5'- cGGCccGGGGACGGcGGCGgcagCCGGGAc -3'
miRNA:   3'- uCCGu-CCCCUGUUaCCGCa---GGUCCUc -5'
28771 5' -58.8 NC_006146.1 + 34010 0.72 0.468205
Target:  5'- aAGGCAGGGGgggggucgggGCAGgcgGGCGUggucCCGGGGc -3'
miRNA:   3'- -UCCGUCCCC----------UGUUa--CCGCA----GGUCCUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.