miRNA display CGI


Results 1 - 20 of 136 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28771 5' -58.8 NC_006146.1 + 5238 0.66 0.805995
Target:  5'- cGGCcucGGGGCuGUGGgGUCCAcGGAc -3'
miRNA:   3'- uCCGuc-CCCUGuUACCgCAGGU-CCUc -5'
28771 5' -58.8 NC_006146.1 + 11134 0.7 0.563704
Target:  5'- cGGCcuaccuGGGGGCGGUGGUGgUCAcGGAGg -3'
miRNA:   3'- uCCGu-----CCCCUGUUACCGCaGGU-CCUC- -5'
28771 5' -58.8 NC_006146.1 + 11381 0.66 0.797246
Target:  5'- cAGGCAGGuGGGCAAgcUGGUGgagCUgcuGGAa -3'
miRNA:   3'- -UCCGUCC-CCUGUU--ACCGCa--GGu--CCUc -5'
28771 5' -58.8 NC_006146.1 + 15501 0.67 0.760902
Target:  5'- ---gGGGGGAC-GUGGUGUaCUGGGAGa -3'
miRNA:   3'- uccgUCCCCUGuUACCGCA-GGUCCUC- -5'
28771 5' -58.8 NC_006146.1 + 18855 0.66 0.82303
Target:  5'- cGGGCGcugccGGGGugG-UGGaCGUgCGGGGGc -3'
miRNA:   3'- -UCCGU-----CCCCugUuACC-GCAgGUCCUC- -5'
28771 5' -58.8 NC_006146.1 + 19965 0.69 0.663586
Target:  5'- aGGGCcGGGGGCGucuGCGaggUCAGGAGg -3'
miRNA:   3'- -UCCGuCCCCUGUuacCGCa--GGUCCUC- -5'
28771 5' -58.8 NC_006146.1 + 26259 0.68 0.703275
Target:  5'- gAGGUGGGGGcACgGGUGGCGgaauuagCCuggguGGAGg -3'
miRNA:   3'- -UCCGUCCCC-UG-UUACCGCa------GGu----CCUC- -5'
28771 5' -58.8 NC_006146.1 + 33646 0.67 0.732464
Target:  5'- gGGGUGGGGGAgGGaggGGUGUgguccCCGGGAc -3'
miRNA:   3'- -UCCGUCCCCUgUUa--CCGCA-----GGUCCUc -5'
28771 5' -58.8 NC_006146.1 + 34010 0.72 0.468205
Target:  5'- aAGGCAGGGGgggggucgggGCAGgcgGGCGUggucCCGGGGc -3'
miRNA:   3'- -UCCGUCCCC----------UGUUa--CCGCA----GGUCCUc -5'
28771 5' -58.8 NC_006146.1 + 34074 0.67 0.751521
Target:  5'- uGGCAcGGGGCcg-GGgGUCcCGGGGGg -3'
miRNA:   3'- uCCGUcCCCUGuuaCCgCAG-GUCCUC- -5'
28771 5' -58.8 NC_006146.1 + 37678 0.66 0.805995
Target:  5'- gGGGCuGGGGGCAAcgaGGCaaggaGcCCAGGuGa -3'
miRNA:   3'- -UCCGuCCCCUGUUa--CCG-----CaGGUCCuC- -5'
28771 5' -58.8 NC_006146.1 + 39857 0.66 0.805995
Target:  5'- cGGCGGGGG-C--UGuGUGcCCGGGGGa -3'
miRNA:   3'- uCCGUCCCCuGuuAC-CGCaGGUCCUC- -5'
28771 5' -58.8 NC_006146.1 + 40845 0.7 0.597476
Target:  5'- gGGGCAGGGGGCGcucuUGGaggcccggcucgcgGUCC-GGAGa -3'
miRNA:   3'- -UCCGUCCCCUGUu---ACCg-------------CAGGuCCUC- -5'
28771 5' -58.8 NC_006146.1 + 43634 0.68 0.703275
Target:  5'- uGGGCGGcGGGGC-GUGGCcG-CCuGGGGa -3'
miRNA:   3'- -UCCGUC-CCCUGuUACCG-CaGGuCCUC- -5'
28771 5' -58.8 NC_006146.1 + 44317 0.68 0.683512
Target:  5'- gGGGCuGGGG-CcGUGGCaG-CCGGGGGc -3'
miRNA:   3'- -UCCGuCCCCuGuUACCG-CaGGUCCUC- -5'
28771 5' -58.8 NC_006146.1 + 44563 0.72 0.477407
Target:  5'- gGGGCuccGGGugGcUGGCGgaaaugCCAGGAGg -3'
miRNA:   3'- -UCCGuc-CCCugUuACCGCa-----GGUCCUC- -5'
28771 5' -58.8 NC_006146.1 + 49196 0.69 0.622503
Target:  5'- -uGCAGGGccucggaGACcAUGGgGUCCAGGAu -3'
miRNA:   3'- ucCGUCCC-------CUGuUACCgCAGGUCCUc -5'
28771 5' -58.8 NC_006146.1 + 49266 0.67 0.751521
Target:  5'- gAGGCggagaAGGGGGCGAUcugGUCCAGGcAGg -3'
miRNA:   3'- -UCCG-----UCCCCUGUUAccgCAGGUCC-UC- -5'
28771 5' -58.8 NC_006146.1 + 49671 0.68 0.726679
Target:  5'- cGGGCAGgGGGGCuAUGGCGgcgucgUCCuccuccacccucuccAGGGGc -3'
miRNA:   3'- -UCCGUC-CCCUGuUACCGC------AGG---------------UCCUC- -5'
28771 5' -58.8 NC_006146.1 + 50725 0.7 0.563704
Target:  5'- cGGCGuugagcGGGGGCGAcggGGCGUCgggaAGGGGg -3'
miRNA:   3'- uCCGU------CCCCUGUUa--CCGCAGg---UCCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.