miRNA display CGI


Results 1 - 20 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28772 3' -58.1 NC_006146.1 + 100238 0.66 0.853724
Target:  5'- uCCgugGCaGUGGGGgcgUUCACGcacGGGGGCUc -3'
miRNA:   3'- -GGa--CG-CACCCUa--AGGUGC---CCUCCGAu -5'
28772 3' -58.1 NC_006146.1 + 33237 0.66 0.845957
Target:  5'- --gGC-UGGGGUUCCGgGGGuggGGGCUc -3'
miRNA:   3'- ggaCGcACCCUAAGGUgCCC---UCCGAu -5'
28772 3' -58.1 NC_006146.1 + 157597 0.66 0.838003
Target:  5'- cCCUGgugcccagcaCGUGGGGguagUCGCGGGcGGGCa- -3'
miRNA:   3'- -GGAC----------GCACCCUaa--GGUGCCC-UCCGau -5'
28772 3' -58.1 NC_006146.1 + 39349 0.66 0.833144
Target:  5'- uCCUGCGauucuuuggauguucUGGG--UCC-CGGGAGGgUGa -3'
miRNA:   3'- -GGACGC---------------ACCCuaAGGuGCCCUCCgAU- -5'
28772 3' -58.1 NC_006146.1 + 52912 0.67 0.81309
Target:  5'- gUCUGCGUGGccc-CC-CGGGGGcGCUGg -3'
miRNA:   3'- -GGACGCACCcuaaGGuGCCCUC-CGAU- -5'
28772 3' -58.1 NC_006146.1 + 103376 0.67 0.810517
Target:  5'- aCgaGCGUGGGGgagauagggcgccugCCAgUGGGGGGCg- -3'
miRNA:   3'- -GgaCGCACCCUaa-------------GGU-GCCCUCCGau -5'
28772 3' -58.1 NC_006146.1 + 53801 0.67 0.795678
Target:  5'- gCCcGCGc-GGcgUCCauaGCGGGGGGCUGg -3'
miRNA:   3'- -GGaCGCacCCuaAGG---UGCCCUCCGAU- -5'
28772 3' -58.1 NC_006146.1 + 130491 0.67 0.790341
Target:  5'- cCCcGgGUGGcuacuuugcccCCGCGGGAGGCUAc -3'
miRNA:   3'- -GGaCgCACCcuaa-------GGUGCCCUCCGAU- -5'
28772 3' -58.1 NC_006146.1 + 70698 0.67 0.786756
Target:  5'- uUCUGCGcUGGGAacgggagCUcaggaggaGCGGGGGGCUu -3'
miRNA:   3'- -GGACGC-ACCCUaa-----GG--------UGCCCUCCGAu -5'
28772 3' -58.1 NC_006146.1 + 94690 0.67 0.786756
Target:  5'- aCCU-CG-GGGGUUCUugGGGuGGGCc- -3'
miRNA:   3'- -GGAcGCaCCCUAAGGugCCC-UCCGau -5'
28772 3' -58.1 NC_006146.1 + 75249 0.68 0.759219
Target:  5'- aCCgaggcggGCGUGGGGUg-CACGGGGauGGCc- -3'
miRNA:   3'- -GGa------CGCACCCUAagGUGCCCU--CCGau -5'
28772 3' -58.1 NC_006146.1 + 39512 0.68 0.755469
Target:  5'- gCCUGCuGUGGGuggcugaugggCUggGGGAGGCg- -3'
miRNA:   3'- -GGACG-CACCCuaa--------GGugCCCUCCGau -5'
28772 3' -58.1 NC_006146.1 + 170078 0.68 0.749812
Target:  5'- --cGCGUGGGGauggCCgGCGGGAGGg-- -3'
miRNA:   3'- ggaCGCACCCUaa--GG-UGCCCUCCgau -5'
28772 3' -58.1 NC_006146.1 + 169146 0.68 0.749812
Target:  5'- --cGCGUGGGGauggCCgGCGGGAGGg-- -3'
miRNA:   3'- ggaCGCACCCUaa--GG-UGCCCUCCgau -5'
28772 3' -58.1 NC_006146.1 + 168214 0.68 0.749812
Target:  5'- --cGCGUGGGGauggCCgGCGGGAGGg-- -3'
miRNA:   3'- ggaCGCACCCUaa--GG-UGCCCUCCgau -5'
28772 3' -58.1 NC_006146.1 + 167282 0.68 0.749812
Target:  5'- --cGCGUGGGGauggCCgGCGGGAGGg-- -3'
miRNA:   3'- ggaCGCACCCUaa--GG-UGCCCUCCgau -5'
28772 3' -58.1 NC_006146.1 + 39745 0.69 0.70146
Target:  5'- gCUG-GUGGGuUUCgGCuGGAGGCUGg -3'
miRNA:   3'- gGACgCACCCuAAGgUGcCCUCCGAU- -5'
28772 3' -58.1 NC_006146.1 + 58098 0.69 0.671706
Target:  5'- aUCUGUacGUGGGGcgCaACGGGAGGCa- -3'
miRNA:   3'- -GGACG--CACCCUaaGgUGCCCUCCGau -5'
28772 3' -58.1 NC_006146.1 + 45335 0.69 0.671706
Target:  5'- gUUGCG-GGGAUUCgG-GGGAGGCc- -3'
miRNA:   3'- gGACGCaCCCUAAGgUgCCCUCCGau -5'
28772 3' -58.1 NC_006146.1 + 159222 0.7 0.6517
Target:  5'- aUCUGCGU-GGAUaCCGUGGGGGGCc- -3'
miRNA:   3'- -GGACGCAcCCUAaGGUGCCCUCCGau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.