miRNA display CGI


Results 41 - 60 of 261 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28772 5' -63.8 NC_006146.1 + 167525 0.67 0.561951
Target:  5'- cGCCGGGCCgCGcccccGGCCCCUCuccuGGGAg -3'
miRNA:   3'- -CGGUCUGGgGCcc---UCGGGGAGc---UCCU- -5'
28772 5' -63.8 NC_006146.1 + 28848 0.67 0.55255
Target:  5'- cCCGGcAgCCCGGGuGGCCCCa-GAGGc -3'
miRNA:   3'- cGGUC-UgGGGCCC-UCGGGGagCUCCu -5'
28772 5' -63.8 NC_006146.1 + 22692 0.67 0.55255
Target:  5'- cCCGGcAgCCCGGGuGGCCCCa-GAGGc -3'
miRNA:   3'- cGGUC-UgGGGCCC-UCGGGGagCUCCu -5'
28772 5' -63.8 NC_006146.1 + 57228 0.67 0.55255
Target:  5'- gGCCGGGCCCgGGcccGAGCCaccuCUCGucGAc -3'
miRNA:   3'- -CGGUCUGGGgCC---CUCGGg---GAGCucCU- -5'
28772 5' -63.8 NC_006146.1 + 116974 0.67 0.55255
Target:  5'- uCCGGACCUCGaGGAGCUCaacgagcgCGuGGAg -3'
miRNA:   3'- cGGUCUGGGGC-CCUCGGGga------GCuCCU- -5'
28772 5' -63.8 NC_006146.1 + 25770 0.67 0.55255
Target:  5'- cCCGGcAgCCCGGGuGGCCCCa-GAGGc -3'
miRNA:   3'- cGGUC-UgGGGCCC-UCGGGGagCUCCu -5'
28772 5' -63.8 NC_006146.1 + 16536 0.67 0.55255
Target:  5'- cCCGGcAgCCCGGGuGGCCCCa-GAGGc -3'
miRNA:   3'- cGGUC-UgGGGCCC-UCGGGGagCUCCu -5'
28772 5' -63.8 NC_006146.1 + 19614 0.67 0.55255
Target:  5'- cCCGGcAgCCCGGGuGGCCCCa-GAGGc -3'
miRNA:   3'- cGGUC-UgGGGCCC-UCGGGGagCUCCu -5'
28772 5' -63.8 NC_006146.1 + 13458 0.67 0.55255
Target:  5'- cCCGGcAgCCCGGGuGGCCCCa-GAGGc -3'
miRNA:   3'- cGGUC-UgGGGCCC-UCGGGGagCUCCu -5'
28772 5' -63.8 NC_006146.1 + 102884 0.67 0.548803
Target:  5'- gGCCGGGCCCCaguuugcgcuuacGGAcCUCCUUGAGGu -3'
miRNA:   3'- -CGGUCUGGGGc------------CCUcGGGGAGCUCCu -5'
28772 5' -63.8 NC_006146.1 + 47527 0.67 0.543197
Target:  5'- aGCCAGGuugcggggcCCCCGGccagcgccaGAGCuCCCUCGGcGAg -3'
miRNA:   3'- -CGGUCU---------GGGGCC---------CUCG-GGGAGCUcCU- -5'
28772 5' -63.8 NC_006146.1 + 28231 0.67 0.543197
Target:  5'- gGCCGGACCCgaGGaGGCgCCUgggCGAGGc -3'
miRNA:   3'- -CGGUCUGGGg-CCcUCG-GGGa--GCUCCu -5'
28772 5' -63.8 NC_006146.1 + 25153 0.67 0.543197
Target:  5'- gGCCGGACCCgaGGaGGCgCCUgggCGAGGc -3'
miRNA:   3'- -CGGUCUGGGg-CCcUCG-GGGa--GCUCCu -5'
28772 5' -63.8 NC_006146.1 + 15920 0.67 0.543197
Target:  5'- gGCCGGACCCgaGGaGGCgCCUgggCGAGGc -3'
miRNA:   3'- -CGGUCUGGGg-CCcUCG-GGGa--GCUCCu -5'
28772 5' -63.8 NC_006146.1 + 22075 0.67 0.543197
Target:  5'- gGCCGGACCCgaGGaGGCgCCUgggCGAGGc -3'
miRNA:   3'- -CGGUCUGGGg-CCcUCG-GGGa--GCUCCu -5'
28772 5' -63.8 NC_006146.1 + 144774 0.67 0.543197
Target:  5'- aCCGGGCCCCGGu-GCCUUUCcauGGAc -3'
miRNA:   3'- cGGUCUGGGGCCcuCGGGGAGcu-CCU- -5'
28772 5' -63.8 NC_006146.1 + 115524 0.67 0.543197
Target:  5'- gGCCucGGuGCCCCGGGcGUCCCgcgcgcgguggCGGGGGc -3'
miRNA:   3'- -CGG--UC-UGGGGCCCuCGGGGa----------GCUCCU- -5'
28772 5' -63.8 NC_006146.1 + 18997 0.67 0.543197
Target:  5'- gGCCGGACCCgaGGaGGCgCCUgggCGAGGc -3'
miRNA:   3'- -CGGUCUGGGg-CCcUCG-GGGa--GCUCCu -5'
28772 5' -63.8 NC_006146.1 + 113976 0.67 0.542265
Target:  5'- --gGGugCCCGGGGGCUCCgCGuuguugaAGGAg -3'
miRNA:   3'- cggUCugGGGCCCUCGGGGaGC-------UCCU- -5'
28772 5' -63.8 NC_006146.1 + 20939 0.67 0.542265
Target:  5'- gGCCcuGGCCCCcacucccacgccuGGGcGCCCCUcaacccCGAGGGc -3'
miRNA:   3'- -CGGu-CUGGGG-------------CCCuCGGGGA------GCUCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.