miRNA display CGI


Results 41 - 60 of 277 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28773 5' -56.4 NC_006146.1 + 92483 0.66 0.912409
Target:  5'- cUCGCGGUGGgaGGUC-CAGAAGgGC-CCa -3'
miRNA:   3'- -GGCGUCGCC--CCGGaGUCUUUgUGuGG- -5'
28773 5' -56.4 NC_006146.1 + 157622 0.66 0.912409
Target:  5'- gUCGCGGgCGGGcaccGCCUgGGucuuGgGCACCa -3'
miRNA:   3'- -GGCGUC-GCCC----CGGAgUCuu--UgUGUGG- -5'
28773 5' -56.4 NC_006146.1 + 43230 0.66 0.912409
Target:  5'- gUGCAGCggaccuuugGGGuGCCUCGGcgccAGCGCgGCCu -3'
miRNA:   3'- gGCGUCG---------CCC-CGGAGUCu---UUGUG-UGG- -5'
28773 5' -56.4 NC_006146.1 + 26073 0.66 0.912409
Target:  5'- gCCGCAaCGuGGGCC--GGAAACA-GCCg -3'
miRNA:   3'- -GGCGUcGC-CCCGGagUCUUUGUgUGG- -5'
28773 5' -56.4 NC_006146.1 + 53699 0.66 0.911239
Target:  5'- uCCGCgccuAGCGGGGgcacguuccccguCCUCuccGGGAGCcgcggcuGCGCCg -3'
miRNA:   3'- -GGCG----UCGCCCC-------------GGAG---UCUUUG-------UGUGG- -5'
28773 5' -56.4 NC_006146.1 + 163798 0.66 0.911239
Target:  5'- aUGCAGCcuGGGCCUUGGcgggccaauuuuAGCAUGCCu -3'
miRNA:   3'- gGCGUCGc-CCCGGAGUCu-----------UUGUGUGG- -5'
28773 5' -56.4 NC_006146.1 + 86614 0.66 0.906467
Target:  5'- -gGCAGCuGGGCUUgAGggGCA-GCUg -3'
miRNA:   3'- ggCGUCGcCCCGGAgUCuuUGUgUGG- -5'
28773 5' -56.4 NC_006146.1 + 112125 0.66 0.906467
Target:  5'- gUGCuGGUGGuGGCCUCGGu-GCugACa -3'
miRNA:   3'- gGCG-UCGCC-CCGGAGUCuuUGugUGg -5'
28773 5' -56.4 NC_006146.1 + 83639 0.66 0.906467
Target:  5'- -gGUGGCGGGGgCUCu---GCGgGCCa -3'
miRNA:   3'- ggCGUCGCCCCgGAGucuuUGUgUGG- -5'
28773 5' -56.4 NC_006146.1 + 52087 0.66 0.906467
Target:  5'- gCUGCGGUcgGGGGCCggcGAGGC-CAUCu -3'
miRNA:   3'- -GGCGUCG--CCCCGGaguCUUUGuGUGG- -5'
28773 5' -56.4 NC_006146.1 + 86546 0.66 0.906467
Target:  5'- -gGCAGCuGGGCUUgAGggGCA-GCUg -3'
miRNA:   3'- ggCGUCGcCCCGGAgUCuuUGUgUGG- -5'
28773 5' -56.4 NC_006146.1 + 86580 0.66 0.906467
Target:  5'- -gGCAGCuGGGCUUgAGggGCA-GCUg -3'
miRNA:   3'- ggCGUCGcCCCGGAgUCuuUGUgUGG- -5'
28773 5' -56.4 NC_006146.1 + 18863 0.66 0.906467
Target:  5'- gCCGgGGUgguggacgugcgGGGGCCUCAGccccCACugUg -3'
miRNA:   3'- -GGCgUCG------------CCCCGGAGUCuuu-GUGugG- -5'
28773 5' -56.4 NC_006146.1 + 102776 0.67 0.900299
Target:  5'- gCGUGGCGuGGcGCCgcucccgCGGAccGGCugGCCg -3'
miRNA:   3'- gGCGUCGC-CC-CGGa------GUCU--UUGugUGG- -5'
28773 5' -56.4 NC_006146.1 + 59148 0.67 0.900299
Target:  5'- cUCGCuGGCcc-GCCUCAGGGACGcCACCc -3'
miRNA:   3'- -GGCG-UCGcccCGGAGUCUUUGU-GUGG- -5'
28773 5' -56.4 NC_006146.1 + 50942 0.67 0.900299
Target:  5'- cUCGCuGGUGGGGauaUCGGAGGCAaaguCCa -3'
miRNA:   3'- -GGCG-UCGCCCCgg-AGUCUUUGUgu--GG- -5'
28773 5' -56.4 NC_006146.1 + 115544 0.67 0.89967
Target:  5'- cCCGCgcgcgguGGCGGGGgCU-GGAGGCG-ACCg -3'
miRNA:   3'- -GGCG-------UCGCCCCgGAgUCUUUGUgUGG- -5'
28773 5' -56.4 NC_006146.1 + 137230 0.67 0.89967
Target:  5'- gCCG-GGUGGgGGCCUgggguccCGGGGAcCACACCc -3'
miRNA:   3'- -GGCgUCGCC-CCGGA-------GUCUUU-GUGUGG- -5'
28773 5' -56.4 NC_006146.1 + 137043 0.67 0.89967
Target:  5'- gCCG-GGUGGgGGCCUgggguucCGGGGAcCACACCc -3'
miRNA:   3'- -GGCgUCGCC-CCGGA-------GUCUUU-GUGUGG- -5'
28773 5' -56.4 NC_006146.1 + 102822 0.67 0.89649
Target:  5'- aUCGC-GCGGGGgCUCugcgcuugcuCGCGCCg -3'
miRNA:   3'- -GGCGuCGCCCCgGAGucuuu-----GUGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.