miRNA display CGI


Results 21 - 40 of 277 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28773 5' -56.4 NC_006146.1 + 116399 0.66 0.918122
Target:  5'- -gGgAGCGGGGcCCUgGGGAgucuccucccACgACGCCa -3'
miRNA:   3'- ggCgUCGCCCC-GGAgUCUU----------UG-UGUGG- -5'
28773 5' -56.4 NC_006146.1 + 86456 0.66 0.918122
Target:  5'- -gGCAGCuGGGCUUUgaGGggGCA-GCCu -3'
miRNA:   3'- ggCGUCGcCCCGGAG--UCuuUGUgUGG- -5'
28773 5' -56.4 NC_006146.1 + 8675 0.66 0.918122
Target:  5'- aCCGCAGCu--GUC-CAGGAuCGCACCa -3'
miRNA:   3'- -GGCGUCGcccCGGaGUCUUuGUGUGG- -5'
28773 5' -56.4 NC_006146.1 + 109403 0.66 0.918122
Target:  5'- -gGCGGCaGGGGCCUCcucGGAGCcCuggugauccuGCCa -3'
miRNA:   3'- ggCGUCG-CCCCGGAGu--CUUUGuG----------UGG- -5'
28773 5' -56.4 NC_006146.1 + 27245 0.66 0.918122
Target:  5'- aCGCGGCGugagugaaGGuGCCaaUAGGAACAgGCCa -3'
miRNA:   3'- gGCGUCGC--------CC-CGGa-GUCUUUGUgUGG- -5'
28773 5' -56.4 NC_006146.1 + 162780 0.66 0.918122
Target:  5'- gCCGCcaccuAGC--GGCCUCAGu--CAUACCa -3'
miRNA:   3'- -GGCG-----UCGccCCGGAGUCuuuGUGUGG- -5'
28773 5' -56.4 NC_006146.1 + 112710 0.66 0.918122
Target:  5'- cCCGCAGCaGGGCgUCccuGAgGC-CCg -3'
miRNA:   3'- -GGCGUCGcCCCGgAGucuUUgUGuGG- -5'
28773 5' -56.4 NC_006146.1 + 2476 0.66 0.918122
Target:  5'- -gGCGGUGuGGCCggCGGggGCAgGCa -3'
miRNA:   3'- ggCGUCGCcCCGGa-GUCuuUGUgUGg -5'
28773 5' -56.4 NC_006146.1 + 146023 0.66 0.918122
Target:  5'- -gGCAGgGGGGCagCUCcu-GGCACugCg -3'
miRNA:   3'- ggCGUCgCCCCG--GAGucuUUGUGugG- -5'
28773 5' -56.4 NC_006146.1 + 95093 0.66 0.918122
Target:  5'- cCCGCA---GGGCCUCGaAGGCgGCGCCc -3'
miRNA:   3'- -GGCGUcgcCCCGGAGUcUUUG-UGUGG- -5'
28773 5' -56.4 NC_006146.1 + 116292 0.66 0.918122
Target:  5'- aCCGCAcgggugaauGUGGGGCaggUCAGGAaggagGCACAg- -3'
miRNA:   3'- -GGCGU---------CGCCCCGg--AGUCUU-----UGUGUgg -5'
28773 5' -56.4 NC_006146.1 + 103183 0.66 0.918122
Target:  5'- aCGCAca--GGUC-CAGAGACACACCa -3'
miRNA:   3'- gGCGUcgccCCGGaGUCUUUGUGUGG- -5'
28773 5' -56.4 NC_006146.1 + 3382 0.66 0.918122
Target:  5'- gCCGCGGCGuccuacaGGCC-CuGAAGCGUGCCu -3'
miRNA:   3'- -GGCGUCGCc------CCGGaGuCUUUGUGUGG- -5'
28773 5' -56.4 NC_006146.1 + 150921 0.66 0.917561
Target:  5'- gCGUcGUGGGGCCUCcuGAccucgcaGACGCcCCc -3'
miRNA:   3'- gGCGuCGCCCCGGAGu-CU-------UUGUGuGG- -5'
28773 5' -56.4 NC_006146.1 + 56807 0.66 0.912409
Target:  5'- gCCGUcuggcgGGCGGGGCUUCuggcccccGAGGCG-GCCu -3'
miRNA:   3'- -GGCG------UCGCCCCGGAGu-------CUUUGUgUGG- -5'
28773 5' -56.4 NC_006146.1 + 92483 0.66 0.912409
Target:  5'- cUCGCGGUGGgaGGUC-CAGAAGgGC-CCa -3'
miRNA:   3'- -GGCGUCGCC--CCGGaGUCUUUgUGuGG- -5'
28773 5' -56.4 NC_006146.1 + 26073 0.66 0.912409
Target:  5'- gCCGCAaCGuGGGCC--GGAAACA-GCCg -3'
miRNA:   3'- -GGCGUcGC-CCCGGagUCUUUGUgUGG- -5'
28773 5' -56.4 NC_006146.1 + 13329 0.66 0.912409
Target:  5'- -gGCGGUGGagucggccgcGGCCUacgCGGAGGC-CACCu -3'
miRNA:   3'- ggCGUCGCC----------CCGGA---GUCUUUGuGUGG- -5'
28773 5' -56.4 NC_006146.1 + 157622 0.66 0.912409
Target:  5'- gUCGCGGgCGGGcaccGCCUgGGucuuGgGCACCa -3'
miRNA:   3'- -GGCGUC-GCCC----CGGAgUCuu--UgUGUGG- -5'
28773 5' -56.4 NC_006146.1 + 77964 0.66 0.912409
Target:  5'- gCCGgAGcCGGuGGCCUUGGAggU--GCCg -3'
miRNA:   3'- -GGCgUC-GCC-CCGGAGUCUuuGugUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.