Results 21 - 40 of 277 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28773 | 5' | -56.4 | NC_006146.1 | + | 170190 | 0.71 | 0.657961 |
Target: 5'- cCCGagGGCGGGGCCggggccuggCGGggGCcaGCGCg -3' miRNA: 3'- -GGCg-UCGCCCCGGa--------GUCuuUG--UGUGg -5' |
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28773 | 5' | -56.4 | NC_006146.1 | + | 167395 | 0.71 | 0.657961 |
Target: 5'- cCCGagGGCGGGGCCggggccuggCGGggGCcaGCGCg -3' miRNA: 3'- -GGCg-UCGCCCCGGa--------GUCuuUG--UGUGg -5' |
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28773 | 5' | -56.4 | NC_006146.1 | + | 169588 | 0.74 | 0.53834 |
Target: 5'- gCGCgucgGGUGGGGCCUgaGGggGCGCGgCg -3' miRNA: 3'- gGCG----UCGCCCCGGAg-UCuuUGUGUgG- -5' |
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28773 | 5' | -56.4 | NC_006146.1 | + | 54424 | 0.79 | 0.295287 |
Target: 5'- uCCGCGGUGgagaGGGUCUCGGAGAuUACGCCc -3' miRNA: 3'- -GGCGUCGC----CCCGGAGUCUUU-GUGUGG- -5' |
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28773 | 5' | -56.4 | NC_006146.1 | + | 102479 | 0.7 | 0.717462 |
Target: 5'- gCCGCGGCGuucaGGGUCUCGcGGAugACAg- -3' miRNA: 3'- -GGCGUCGC----CCCGGAGU-CUUugUGUgg -5' |
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28773 | 5' | -56.4 | NC_006146.1 | + | 45720 | 0.71 | 0.697819 |
Target: 5'- -aGCAGCGGGGCCac-GAccCugACCu -3' miRNA: 3'- ggCGUCGCCCCGGaguCUuuGugUGG- -5' |
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28773 | 5' | -56.4 | NC_006146.1 | + | 63418 | 0.73 | 0.587728 |
Target: 5'- gCGCAGUGGcGGcCCUCAGcgcGGCcauGCGCCa -3' miRNA: 3'- gGCGUCGCC-CC-GGAGUCu--UUG---UGUGG- -5' |
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28773 | 5' | -56.4 | NC_006146.1 | + | 155569 | 0.8 | 0.256992 |
Target: 5'- cUCGC-GCGGGGCgCccgcCAGggGCACACCg -3' miRNA: 3'- -GGCGuCGCCCCG-Ga---GUCuuUGUGUGG- -5' |
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28773 | 5' | -56.4 | NC_006146.1 | + | 76579 | 0.71 | 0.687913 |
Target: 5'- uUGCGGgaUGGGGCCgCAGAG--GCACCg -3' miRNA: 3'- gGCGUC--GCCCCGGaGUCUUugUGUGG- -5' |
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28773 | 5' | -56.4 | NC_006146.1 | + | 147721 | 0.81 | 0.21756 |
Target: 5'- -gGCGGCGGGGCCUgGGuaauAGCGgGCCg -3' miRNA: 3'- ggCGUCGCCCCGGAgUCu---UUGUgUGG- -5' |
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28773 | 5' | -56.4 | NC_006146.1 | + | 6453 | 0.72 | 0.617781 |
Target: 5'- gCGCGGCGGGGUUUCu----CACACa -3' miRNA: 3'- gGCGUCGCCCCGGAGucuuuGUGUGg -5' |
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28773 | 5' | -56.4 | NC_006146.1 | + | 155481 | 0.71 | 0.677962 |
Target: 5'- aCUGCAGCcGGGCCagccccUCuGAGGC-CACCu -3' miRNA: 3'- -GGCGUCGcCCCGG------AGuCUUUGuGUGG- -5' |
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28773 | 5' | -56.4 | NC_006146.1 | + | 145530 | 0.73 | 0.567837 |
Target: 5'- gCCGCGGCGGacGGCgUU-GAccgGACACACCu -3' miRNA: 3'- -GGCGUCGCC--CCGgAGuCU---UUGUGUGG- -5' |
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28773 | 5' | -56.4 | NC_006146.1 | + | 51905 | 0.73 | 0.548119 |
Target: 5'- gCGuCGGCgGGGGCCUCcGAGGCACcgacgggcgGCCc -3' miRNA: 3'- gGC-GUCG-CCCCGGAGuCUUUGUG---------UGG- -5' |
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28773 | 5' | -56.4 | NC_006146.1 | + | 99779 | 0.77 | 0.384767 |
Target: 5'- cUCGUagauGGCGGGGCgcagguguCUCGGAAGgGCACCg -3' miRNA: 3'- -GGCG----UCGCCCCG--------GAGUCUUUgUGUGG- -5' |
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28773 | 5' | -56.4 | NC_006146.1 | + | 43503 | 0.77 | 0.353035 |
Target: 5'- uCCgGCGGCGGGGCC-CAGccccAAgACACCu -3' miRNA: 3'- -GG-CGUCGCCCCGGaGUCu---UUgUGUGG- -5' |
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28773 | 5' | -56.4 | NC_006146.1 | + | 46718 | 0.7 | 0.727183 |
Target: 5'- gCCGCGGCGGcuccgaGGCgggCGGAGGcCACGCUg -3' miRNA: 3'- -GGCGUCGCC------CCGga-GUCUUU-GUGUGG- -5' |
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28773 | 5' | -56.4 | NC_006146.1 | + | 128174 | 0.7 | 0.717462 |
Target: 5'- aUGCAGCgacgccgggaGGcGGCC-CAGggGgGCGCCg -3' miRNA: 3'- gGCGUCG----------CC-CCGGaGUCuuUgUGUGG- -5' |
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28773 | 5' | -56.4 | NC_006146.1 | + | 85592 | 0.7 | 0.717462 |
Target: 5'- -gGCAGCcGcccGCCUCGGAAGCugGCACCg -3' miRNA: 3'- ggCGUCGcCc--CGGAGUCUUUG--UGUGG- -5' |
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28773 | 5' | -56.4 | NC_006146.1 | + | 56747 | 0.71 | 0.707671 |
Target: 5'- gCGCGGgacgucCGGGGCCugaUCGcGGAGCACGCg -3' miRNA: 3'- gGCGUC------GCCCCGG---AGU-CUUUGUGUGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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