miRNA display CGI


Results 1 - 20 of 277 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28773 5' -56.4 NC_006146.1 + 46077 0.82 0.183419
Target:  5'- gCUGCuGCaGGGCCUCGGggGCgaaGCACCg -3'
miRNA:   3'- -GGCGuCGcCCCGGAGUCuuUG---UGUGG- -5'
28773 5' -56.4 NC_006146.1 + 63418 0.73 0.587728
Target:  5'- gCGCAGUGGcGGcCCUCAGcgcGGCcauGCGCCa -3'
miRNA:   3'- gGCGUCGCC-CC-GGAGUCu--UUG---UGUGG- -5'
28773 5' -56.4 NC_006146.1 + 167395 0.71 0.657961
Target:  5'- cCCGagGGCGGGGCCggggccuggCGGggGCcaGCGCg -3'
miRNA:   3'- -GGCg-UCGCCCCGGa--------GUCuuUG--UGUGg -5'
28773 5' -56.4 NC_006146.1 + 47407 0.66 0.928858
Target:  5'- aCCGUGGCcaGGGccaGCCUCAGcuccucCAUGCCg -3'
miRNA:   3'- -GGCGUCG--CCC---CGGAGUCuuu---GUGUGG- -5'
28773 5' -56.4 NC_006146.1 + 43503 0.77 0.353035
Target:  5'- uCCgGCGGCGGGGCC-CAGccccAAgACACCu -3'
miRNA:   3'- -GG-CGUCGCCCCGGaGUCu---UUgUGUGG- -5'
28773 5' -56.4 NC_006146.1 + 170519 0.77 0.368667
Target:  5'- gCGCggcgGGCGGGGCCUgaGGggGCGCGgCg -3'
miRNA:   3'- gGCG----UCGCCCCGGAg-UCuuUGUGUgG- -5'
28773 5' -56.4 NC_006146.1 + 99779 0.77 0.384767
Target:  5'- cUCGUagauGGCGGGGCgcagguguCUCGGAAGgGCACCg -3'
miRNA:   3'- -GGCG----UCGCCCCG--------GAGUCUUUgUGUGG- -5'
28773 5' -56.4 NC_006146.1 + 168658 0.76 0.426995
Target:  5'- gCGuCGGUGGGGCCUgaGGggGCGCGgCg -3'
miRNA:   3'- gGC-GUCGCCCCGGAg-UCuuUGUGUgG- -5'
28773 5' -56.4 NC_006146.1 + 51905 0.73 0.548119
Target:  5'- gCGuCGGCgGGGGCCUCcGAGGCACcgacgggcgGCCc -3'
miRNA:   3'- gGC-GUCG-CCCCGGAGuCUUUGUG---------UGG- -5'
28773 5' -56.4 NC_006146.1 + 149841 0.73 0.587728
Target:  5'- -gGCGGCcaGGGCCUCGgcGAAGCGCAgCg -3'
miRNA:   3'- ggCGUCGc-CCCGGAGU--CUUUGUGUgG- -5'
28773 5' -56.4 NC_006146.1 + 131212 0.73 0.566846
Target:  5'- uCCGgAGCGGcgcugcaGGCC-CAGGAGCcCGCCg -3'
miRNA:   3'- -GGCgUCGCC-------CCGGaGUCUUUGuGUGG- -5'
28773 5' -56.4 NC_006146.1 + 169588 0.74 0.53834
Target:  5'- gCGCgucgGGUGGGGCCUgaGGggGCGCGgCg -3'
miRNA:   3'- gGCG----UCGCCCCGGAg-UCuuUGUGUgG- -5'
28773 5' -56.4 NC_006146.1 + 147721 0.81 0.21756
Target:  5'- -gGCGGCGGGGCCUgGGuaauAGCGgGCCg -3'
miRNA:   3'- ggCGUCGCCCCGGAgUCu---UUGUgUGG- -5'
28773 5' -56.4 NC_006146.1 + 145530 0.73 0.567837
Target:  5'- gCCGCGGCGGacGGCgUU-GAccgGACACACCu -3'
miRNA:   3'- -GGCGUCGCC--CCGgAGuCU---UUGUGUGG- -5'
28773 5' -56.4 NC_006146.1 + 155569 0.8 0.256992
Target:  5'- cUCGC-GCGGGGCgCccgcCAGggGCACACCg -3'
miRNA:   3'- -GGCGuCGCCCCG-Ga---GUCuuUGUGUGG- -5'
28773 5' -56.4 NC_006146.1 + 167723 0.74 0.53834
Target:  5'- gCGCgucgGGUGGGGCCUgaGGggGCGCGgCg -3'
miRNA:   3'- gGCG----UCGCCCCGGAg-UCuuUGUGUgG- -5'
28773 5' -56.4 NC_006146.1 + 39729 0.73 0.587728
Target:  5'- -gGCAaCgGGGGCCUCGGAguGAUugACCa -3'
miRNA:   3'- ggCGUcG-CCCCGGAGUCU--UUGugUGG- -5'
28773 5' -56.4 NC_006146.1 + 6453 0.72 0.617781
Target:  5'- gCGCGGCGGGGUUUCu----CACACa -3'
miRNA:   3'- gGCGUCGCCCCGGAGucuuuGUGUGg -5'
28773 5' -56.4 NC_006146.1 + 54424 0.79 0.295287
Target:  5'- uCCGCGGUGgagaGGGUCUCGGAGAuUACGCCc -3'
miRNA:   3'- -GGCGUCGC----CCCGGAGUCUUU-GUGUGG- -5'
28773 5' -56.4 NC_006146.1 + 119961 0.77 0.376659
Target:  5'- cUCGguGgGGGgucaggagacGCCUCGGAGACACAUCu -3'
miRNA:   3'- -GGCguCgCCC----------CGGAGUCUUUGUGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.