miRNA display CGI


Results 1 - 20 of 277 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28773 5' -56.4 NC_006146.1 + 61839 0.66 0.930895
Target:  5'- -gGCAGUGGGGCuggugccgggacuccCggggCAGAGguuccacggggGCGCGCCc -3'
miRNA:   3'- ggCGUCGCCCCG---------------Ga---GUCUU-----------UGUGUGG- -5'
28773 5' -56.4 NC_006146.1 + 77964 0.66 0.912409
Target:  5'- gCCGgAGcCGGuGGCCUUGGAggU--GCCg -3'
miRNA:   3'- -GGCgUC-GCC-CCGGAGUCUuuGugUGG- -5'
28773 5' -56.4 NC_006146.1 + 26073 0.66 0.912409
Target:  5'- gCCGCAaCGuGGGCC--GGAAACA-GCCg -3'
miRNA:   3'- -GGCGUcGC-CCCGGagUCUUUGUgUGG- -5'
28773 5' -56.4 NC_006146.1 + 13329 0.66 0.912409
Target:  5'- -gGCGGUGGagucggccgcGGCCUacgCGGAGGC-CACCu -3'
miRNA:   3'- ggCGUCGCC----------CCGGA---GUCUUUGuGUGG- -5'
28773 5' -56.4 NC_006146.1 + 86614 0.66 0.906467
Target:  5'- -gGCAGCuGGGCUUgAGggGCA-GCUg -3'
miRNA:   3'- ggCGUCGcCCCGGAgUCuuUGUgUGG- -5'
28773 5' -56.4 NC_006146.1 + 86580 0.66 0.906467
Target:  5'- -gGCAGCuGGGCUUgAGggGCA-GCUg -3'
miRNA:   3'- ggCGUCGcCCCGGAgUCuuUGUgUGG- -5'
28773 5' -56.4 NC_006146.1 + 86546 0.66 0.906467
Target:  5'- -gGCAGCuGGGCUUgAGggGCA-GCUg -3'
miRNA:   3'- ggCGUCGcCCCGGAgUCuuUGUgUGG- -5'
28773 5' -56.4 NC_006146.1 + 18863 0.66 0.906467
Target:  5'- gCCGgGGUgguggacgugcgGGGGCCUCAGccccCACugUg -3'
miRNA:   3'- -GGCgUCG------------CCCCGGAGUCuuu-GUGugG- -5'
28773 5' -56.4 NC_006146.1 + 52087 0.66 0.906467
Target:  5'- gCUGCGGUcgGGGGCCggcGAGGC-CAUCu -3'
miRNA:   3'- -GGCGUCG--CCCCGGaguCUUUGuGUGG- -5'
28773 5' -56.4 NC_006146.1 + 116399 0.66 0.918122
Target:  5'- -gGgAGCGGGGcCCUgGGGAgucuccucccACgACGCCa -3'
miRNA:   3'- ggCgUCGCCCC-GGAgUCUU----------UG-UGUGG- -5'
28773 5' -56.4 NC_006146.1 + 8675 0.66 0.918122
Target:  5'- aCCGCAGCu--GUC-CAGGAuCGCACCa -3'
miRNA:   3'- -GGCGUCGcccCGGaGUCUUuGUGUGG- -5'
28773 5' -56.4 NC_006146.1 + 86456 0.66 0.918122
Target:  5'- -gGCAGCuGGGCUUUgaGGggGCA-GCCu -3'
miRNA:   3'- ggCGUCGcCCCGGAG--UCuuUGUgUGG- -5'
28773 5' -56.4 NC_006146.1 + 168903 0.66 0.928858
Target:  5'- cCCGCAGCGcgacugucagcaGGuuCUCGGAGACGaggggGCCc -3'
miRNA:   3'- -GGCGUCGC------------CCcgGAGUCUUUGUg----UGG- -5'
28773 5' -56.4 NC_006146.1 + 103103 0.66 0.928858
Target:  5'- uCCGaGGCGGGGC---AGAGcCugGCCg -3'
miRNA:   3'- -GGCgUCGCCCCGgagUCUUuGugUGG- -5'
28773 5' -56.4 NC_006146.1 + 126193 0.66 0.928858
Target:  5'- gCCGgcCAGCgGGGGCCaCGGccAC-CGCCg -3'
miRNA:   3'- -GGC--GUCG-CCCCGGaGUCuuUGuGUGG- -5'
28773 5' -56.4 NC_006146.1 + 111900 0.66 0.928858
Target:  5'- -gGCAGCGcGGGaggCAGAugUugGCCa -3'
miRNA:   3'- ggCGUCGC-CCCggaGUCUuuGugUGG- -5'
28773 5' -56.4 NC_006146.1 + 114759 0.66 0.926785
Target:  5'- gCCGCGGgGaGGGCuCUCGGucucggggcccgcGGC-CACCu -3'
miRNA:   3'- -GGCGUCgC-CCCG-GAGUCu------------UUGuGUGG- -5'
28773 5' -56.4 NC_006146.1 + 112710 0.66 0.918122
Target:  5'- cCCGCAGCaGGGCgUCccuGAgGC-CCg -3'
miRNA:   3'- -GGCGUCGcCCCGgAGucuUUgUGuGG- -5'
28773 5' -56.4 NC_006146.1 + 27245 0.66 0.918122
Target:  5'- aCGCGGCGugagugaaGGuGCCaaUAGGAACAgGCCa -3'
miRNA:   3'- gGCGUCGC--------CC-CGGa-GUCUUUGUgUGG- -5'
28773 5' -56.4 NC_006146.1 + 109403 0.66 0.918122
Target:  5'- -gGCGGCaGGGGCCUCcucGGAGCcCuggugauccuGCCa -3'
miRNA:   3'- ggCGUCG-CCCCGGAGu--CUUUGuG----------UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.