miRNA display CGI


Results 1 - 20 of 277 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28773 5' -56.4 NC_006146.1 + 126093 1.14 0.001522
Target:  5'- gCCGCAGCGGGGCCUCAGAAACACACCa -3'
miRNA:   3'- -GGCGUCGCCCCGGAGUCUUUGUGUGG- -5'
28773 5' -56.4 NC_006146.1 + 33037 0.85 0.132423
Target:  5'- cCCGgGGCGGGGCC-CGG-GACACGCCc -3'
miRNA:   3'- -GGCgUCGCCCCGGaGUCuUUGUGUGG- -5'
28773 5' -56.4 NC_006146.1 + 46077 0.82 0.183419
Target:  5'- gCUGCuGCaGGGCCUCGGggGCgaaGCACCg -3'
miRNA:   3'- -GGCGuCGcCCCGGAGUCuuUG---UGUGG- -5'
28773 5' -56.4 NC_006146.1 + 147721 0.81 0.21756
Target:  5'- -gGCGGCGGGGCCUgGGuaauAGCGgGCCg -3'
miRNA:   3'- ggCGUCGCCCCGGAgUCu---UUGUgUGG- -5'
28773 5' -56.4 NC_006146.1 + 155569 0.8 0.256992
Target:  5'- cUCGC-GCGGGGCgCccgcCAGggGCACACCg -3'
miRNA:   3'- -GGCGuCGCCCCG-Ga---GUCuuUGUGUGG- -5'
28773 5' -56.4 NC_006146.1 + 54424 0.79 0.295287
Target:  5'- uCCGCGGUGgagaGGGUCUCGGAGAuUACGCCc -3'
miRNA:   3'- -GGCGUCGC----CCCGGAGUCUUU-GUGUGG- -5'
28773 5' -56.4 NC_006146.1 + 22097 0.78 0.323201
Target:  5'- gCCGCGGCGGGuGUCaUCaucgGGAAAgGCACCg -3'
miRNA:   3'- -GGCGUCGCCC-CGG-AG----UCUUUgUGUGG- -5'
28773 5' -56.4 NC_006146.1 + 43503 0.77 0.353035
Target:  5'- uCCgGCGGCGGGGCC-CAGccccAAgACACCu -3'
miRNA:   3'- -GG-CGUCGCCCCGGaGUCu---UUgUGUGG- -5'
28773 5' -56.4 NC_006146.1 + 41050 0.77 0.367874
Target:  5'- uCCGCGGCggcccugGGGGCCUCGGGGugGagggagGCCa -3'
miRNA:   3'- -GGCGUCG-------CCCCGGAGUCUUugUg-----UGG- -5'
28773 5' -56.4 NC_006146.1 + 170519 0.77 0.368667
Target:  5'- gCGCggcgGGCGGGGCCUgaGGggGCGCGgCg -3'
miRNA:   3'- gGCG----UCGCCCCGGAg-UCuuUGUGUgG- -5'
28773 5' -56.4 NC_006146.1 + 25390 0.77 0.368667
Target:  5'- gCCGCGGCaaGGGCUacgUCAGAgucuccgugGACACGCCg -3'
miRNA:   3'- -GGCGUCGc-CCCGG---AGUCU---------UUGUGUGG- -5'
28773 5' -56.4 NC_006146.1 + 119961 0.77 0.376659
Target:  5'- cUCGguGgGGGgucaggagacGCCUCGGAGACACAUCu -3'
miRNA:   3'- -GGCguCgCCC----------CGGAGUCUUUGUGUGG- -5'
28773 5' -56.4 NC_006146.1 + 15138 0.77 0.376659
Target:  5'- uCUGCGGCGGGGUCUaCAGcuccucGGGCgACGCCg -3'
miRNA:   3'- -GGCGUCGCCCCGGA-GUC------UUUG-UGUGG- -5'
28773 5' -56.4 NC_006146.1 + 34026 0.77 0.384767
Target:  5'- gCCGgAGCGGGGCagcggaccCAGggGCAC-CCg -3'
miRNA:   3'- -GGCgUCGCCCCGga------GUCuuUGUGuGG- -5'
28773 5' -56.4 NC_006146.1 + 34398 0.77 0.384767
Target:  5'- gCCGgAGCGGGGCagcggaccCAGggGCAC-CCg -3'
miRNA:   3'- -GGCgUCGCCCCGga------GUCuuUGUGuGG- -5'
28773 5' -56.4 NC_006146.1 + 35141 0.77 0.384767
Target:  5'- gCCGgAGCGGGGCagcggaccCAGggGCAC-CCg -3'
miRNA:   3'- -GGCgUCGCCCCGga------GUCuuUGUGuGG- -5'
28773 5' -56.4 NC_006146.1 + 35327 0.77 0.384767
Target:  5'- gCCGgAGCGGGGCagcggaccCAGggGCAC-CCg -3'
miRNA:   3'- -GGCgUCGCCCCGga------GUCuuUGUGuGG- -5'
28773 5' -56.4 NC_006146.1 + 34491 0.77 0.384767
Target:  5'- gCCGgAGCGGGGCagcggaccCAGggGCAC-CCg -3'
miRNA:   3'- -GGCgUCGCCCCGga------GUCuuUGUGuGG- -5'
28773 5' -56.4 NC_006146.1 + 35234 0.77 0.384767
Target:  5'- gCCGgAGCGGGGCagcggaccCAGggGCAC-CCg -3'
miRNA:   3'- -GGCgUCGCCCCGga------GUCuuUGUGuGG- -5'
28773 5' -56.4 NC_006146.1 + 35699 0.77 0.384767
Target:  5'- gCCGgAGCGGGGCagcggaccCAGggGCAC-CCg -3'
miRNA:   3'- -GGCgUCGCCCCGga------GUCuuUGUGuGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.