miRNA display CGI


Results 21 - 40 of 277 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28773 5' -56.4 NC_006146.1 + 34584 0.77 0.384767
Target:  5'- gCCGgAGCGGGGCagcggaccCAGggGCAC-CCg -3'
miRNA:   3'- -GGCgUCGCCCCGga------GUCuuUGUGuGG- -5'
28773 5' -56.4 NC_006146.1 + 34305 0.77 0.384767
Target:  5'- gCCGgAGCGGGGCagcggaccCAGggGCAC-CCg -3'
miRNA:   3'- -GGCgUCGCCCCGga------GUCuuUGUGuGG- -5'
28773 5' -56.4 NC_006146.1 + 34398 0.77 0.384767
Target:  5'- gCCGgAGCGGGGCagcggaccCAGggGCAC-CCg -3'
miRNA:   3'- -GGCgUCGCCCCGga------GUCuuUGUGuGG- -5'
28773 5' -56.4 NC_006146.1 + 34955 0.77 0.384767
Target:  5'- gCCGgAGCGGGGCagcggaccCAGggGCAC-CCg -3'
miRNA:   3'- -GGCgUCGCCCCGga------GUCuuUGUGuGG- -5'
28773 5' -56.4 NC_006146.1 + 34770 0.77 0.384767
Target:  5'- gCCGgAGCGGGGCagcggaccCAGggGCAC-CCg -3'
miRNA:   3'- -GGCgUCGCCCCGga------GUCuuUGUGuGG- -5'
28773 5' -56.4 NC_006146.1 + 34677 0.77 0.384767
Target:  5'- gCCGgAGCGGGGCagcggaccCAGggGCAC-CCg -3'
miRNA:   3'- -GGCgUCGCCCCGga------GUCuuUGUGuGG- -5'
28773 5' -56.4 NC_006146.1 + 35513 0.77 0.384767
Target:  5'- gCCGgAGCGGGGCagcggaccCAGggGCAC-CCg -3'
miRNA:   3'- -GGCgUCGCCCCGga------GUCuuUGUGuGG- -5'
28773 5' -56.4 NC_006146.1 + 35141 0.77 0.384767
Target:  5'- gCCGgAGCGGGGCagcggaccCAGggGCAC-CCg -3'
miRNA:   3'- -GGCgUCGCCCCGga------GUCuuUGUGuGG- -5'
28773 5' -56.4 NC_006146.1 + 33655 0.77 0.384767
Target:  5'- gCCGgAGCGGGGCagcggaccCAGggGCAC-CCg -3'
miRNA:   3'- -GGCgUCGCCCCGga------GUCuuUGUGuGG- -5'
28773 5' -56.4 NC_006146.1 + 34119 0.77 0.384767
Target:  5'- gCCGgAGCGGGGCagcggaccCAGggGCAC-CCg -3'
miRNA:   3'- -GGCgUCGCCCCGga------GUCuuUGUGuGG- -5'
28773 5' -56.4 NC_006146.1 + 33841 0.77 0.384767
Target:  5'- gCCGgAGCGGGGCagcggaccCAGggGCAC-CCg -3'
miRNA:   3'- -GGCgUCGCCCCGga------GUCuuUGUGuGG- -5'
28773 5' -56.4 NC_006146.1 + 33376 0.77 0.384767
Target:  5'- gCCGgAGCGGGGCagcggaccCAGggGCAC-CCg -3'
miRNA:   3'- -GGCgUCGCCCCGga------GUCuuUGUGuGG- -5'
28773 5' -56.4 NC_006146.1 + 33469 0.77 0.384767
Target:  5'- gCCGgAGCGGGGCagcggaccCAGggGCAC-CCg -3'
miRNA:   3'- -GGCgUCGCCCCGga------GUCuuUGUGuGG- -5'
28773 5' -56.4 NC_006146.1 + 33562 0.77 0.384767
Target:  5'- gCCGgAGCGGGGCagcggaccCAGggGCAC-CCg -3'
miRNA:   3'- -GGCgUCGCCCCGga------GUCuuUGUGuGG- -5'
28773 5' -56.4 NC_006146.1 + 34026 0.77 0.384767
Target:  5'- gCCGgAGCGGGGCagcggaccCAGggGCAC-CCg -3'
miRNA:   3'- -GGCgUCGCCCCGga------GUCuuUGUGuGG- -5'
28773 5' -56.4 NC_006146.1 + 33748 0.77 0.384767
Target:  5'- gCCGgAGCGGGGCagcggaccCAGggGCAC-CCg -3'
miRNA:   3'- -GGCgUCGCCCCGga------GUCuuUGUGuGG- -5'
28773 5' -56.4 NC_006146.1 + 99779 0.77 0.384767
Target:  5'- cUCGUagauGGCGGGGCgcagguguCUCGGAAGgGCACCg -3'
miRNA:   3'- -GGCG----UCGCCCCG--------GAGUCUUUgUGUGG- -5'
28773 5' -56.4 NC_006146.1 + 35606 0.77 0.384767
Target:  5'- gCCGgAGCGGGGCagcggaccCAGggGCAC-CCg -3'
miRNA:   3'- -GGCgUCGCCCCGga------GUCuuUGUGuGG- -5'
28773 5' -56.4 NC_006146.1 + 35699 0.77 0.384767
Target:  5'- gCCGgAGCGGGGCagcggaccCAGggGCAC-CCg -3'
miRNA:   3'- -GGCgUCGCCCCGga------GUCuuUGUGuGG- -5'
28773 5' -56.4 NC_006146.1 + 33933 0.77 0.384767
Target:  5'- gCCGgAGCGGGGCagcggaccCAGggGCAC-CCg -3'
miRNA:   3'- -GGCgUCGCCCCGga------GUCuuUGUGuGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.