miRNA display CGI


Results 21 - 40 of 277 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28773 5' -56.4 NC_006146.1 + 19271 0.67 0.892602
Target:  5'- aCCGCAagacccccuGCcGGGUCUCGGuggagcgggucACGCGCCg -3'
miRNA:   3'- -GGCGU---------CGcCCCGGAGUCuu---------UGUGUGG- -5'
28773 5' -56.4 NC_006146.1 + 22097 0.78 0.323201
Target:  5'- gCCGCGGCGGGuGUCaUCaucgGGAAAgGCACCg -3'
miRNA:   3'- -GGCGUCGCCC-CGG-AG----UCUUUgUGUGG- -5'
28773 5' -56.4 NC_006146.1 + 25028 0.67 0.866169
Target:  5'- cCCGCGGCcauuGGGGCCagCAagcGAGACcaGCCc -3'
miRNA:   3'- -GGCGUCG----CCCCGGa-GU---CUUUGugUGG- -5'
28773 5' -56.4 NC_006146.1 + 25390 0.77 0.368667
Target:  5'- gCCGCGGCaaGGGCUacgUCAGAgucuccgugGACACGCCg -3'
miRNA:   3'- -GGCGUCGc-CCCGG---AGUCU---------UUGUGUGG- -5'
28773 5' -56.4 NC_006146.1 + 26073 0.66 0.912409
Target:  5'- gCCGCAaCGuGGGCC--GGAAACA-GCCg -3'
miRNA:   3'- -GGCGUcGC-CCCGGagUCUUUGUgUGG- -5'
28773 5' -56.4 NC_006146.1 + 26137 0.67 0.87342
Target:  5'- -gGCAcCGGGGCCcggUCGGAAAgaGCACg -3'
miRNA:   3'- ggCGUcGCCCCGG---AGUCUUUg-UGUGg -5'
28773 5' -56.4 NC_006146.1 + 27245 0.66 0.918122
Target:  5'- aCGCGGCGugagugaaGGuGCCaaUAGGAACAgGCCa -3'
miRNA:   3'- gGCGUCGC--------CC-CGGa-GUCUUUGUgUGG- -5'
28773 5' -56.4 NC_006146.1 + 28106 0.67 0.866169
Target:  5'- cCCGCGGCcauuGGGGCCagCAagcGAGACcaGCCc -3'
miRNA:   3'- -GGCGUCG----CCCCGGa-GU---CUUUGugUGG- -5'
28773 5' -56.4 NC_006146.1 + 31327 0.68 0.850286
Target:  5'- cCCGCAGCcucauuGGGCUUaCAGGccucauuauacucAACACACg -3'
miRNA:   3'- -GGCGUCGc-----CCCGGA-GUCU-------------UUGUGUGg -5'
28773 5' -56.4 NC_006146.1 + 32016 0.71 0.687913
Target:  5'- -gGaCAGaGGGGCCUCGGGAcgaggcGCugGCCc -3'
miRNA:   3'- ggC-GUCgCCCCGGAGUCUU------UGugUGG- -5'
28773 5' -56.4 NC_006146.1 + 33037 0.85 0.132423
Target:  5'- cCCGgGGCGGGGCC-CGG-GACACGCCc -3'
miRNA:   3'- -GGCgUCGCCCCGGaGUCuUUGUGUGG- -5'
28773 5' -56.4 NC_006146.1 + 33376 0.77 0.384767
Target:  5'- gCCGgAGCGGGGCagcggaccCAGggGCAC-CCg -3'
miRNA:   3'- -GGCgUCGCCCCGga------GUCuuUGUGuGG- -5'
28773 5' -56.4 NC_006146.1 + 33469 0.77 0.384767
Target:  5'- gCCGgAGCGGGGCagcggaccCAGggGCAC-CCg -3'
miRNA:   3'- -GGCgUCGCCCCGga------GUCuuUGUGuGG- -5'
28773 5' -56.4 NC_006146.1 + 33562 0.77 0.384767
Target:  5'- gCCGgAGCGGGGCagcggaccCAGggGCAC-CCg -3'
miRNA:   3'- -GGCgUCGCCCCGga------GUCuuUGUGuGG- -5'
28773 5' -56.4 NC_006146.1 + 33655 0.77 0.384767
Target:  5'- gCCGgAGCGGGGCagcggaccCAGggGCAC-CCg -3'
miRNA:   3'- -GGCgUCGCCCCGga------GUCuuUGUGuGG- -5'
28773 5' -56.4 NC_006146.1 + 33748 0.77 0.384767
Target:  5'- gCCGgAGCGGGGCagcggaccCAGggGCAC-CCg -3'
miRNA:   3'- -GGCgUCGCCCCGga------GUCuuUGUGuGG- -5'
28773 5' -56.4 NC_006146.1 + 33841 0.77 0.384767
Target:  5'- gCCGgAGCGGGGCagcggaccCAGggGCAC-CCg -3'
miRNA:   3'- -GGCgUCGCCCCGga------GUCuuUGUGuGG- -5'
28773 5' -56.4 NC_006146.1 + 33933 0.77 0.384767
Target:  5'- gCCGgAGCGGGGCagcggaccCAGggGCAC-CCg -3'
miRNA:   3'- -GGCgUCGCCCCGga------GUCuuUGUGuGG- -5'
28773 5' -56.4 NC_006146.1 + 34026 0.77 0.384767
Target:  5'- gCCGgAGCGGGGCagcggaccCAGggGCAC-CCg -3'
miRNA:   3'- -GGCgUCGCCCCGga------GUCuuUGUGuGG- -5'
28773 5' -56.4 NC_006146.1 + 34070 0.68 0.830286
Target:  5'- cCCGUGGCacGGGGCCggggguccCGGGgggcagccgcgacccAGCGCGCCc -3'
miRNA:   3'- -GGCGUCG--CCCCGGa-------GUCU---------------UUGUGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.