miRNA display CGI


Results 1 - 20 of 277 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28773 5' -56.4 NC_006146.1 + 847 0.7 0.744474
Target:  5'- gCGCGGCcccGGGCCcuccccgacaucCAGGGACugGCCg -3'
miRNA:   3'- gGCGUCGc--CCCGGa-----------GUCUUUGugUGG- -5'
28773 5' -56.4 NC_006146.1 + 850 0.68 0.826983
Target:  5'- -gGCAuaGGGGCCcUAGGAGCAgCGCUu -3'
miRNA:   3'- ggCGUcgCCCCGGaGUCUUUGU-GUGG- -5'
28773 5' -56.4 NC_006146.1 + 1779 0.7 0.744474
Target:  5'- gCGCGGCcccGGGCCcuccccgacaucCAGGGACugGCCg -3'
miRNA:   3'- gGCGUCGc--CCCGGa-----------GUCUUUGugUGG- -5'
28773 5' -56.4 NC_006146.1 + 2476 0.66 0.918122
Target:  5'- -gGCGGUGuGGCCggCGGggGCAgGCa -3'
miRNA:   3'- ggCGUCGCcCCGGa-GUCuuUGUgUGg -5'
28773 5' -56.4 NC_006146.1 + 2711 0.7 0.744474
Target:  5'- gCGCGGCcccGGGCCcuccccgacaucCAGGGACugGCCg -3'
miRNA:   3'- gGCGUCGc--CCCGGa-----------GUCUUUGugUGG- -5'
28773 5' -56.4 NC_006146.1 + 3382 0.66 0.918122
Target:  5'- gCCGCGGCGuccuacaGGCC-CuGAAGCGUGCCu -3'
miRNA:   3'- -GGCGUCGCc------CCGGaGuCUUUGUGUGG- -5'
28773 5' -56.4 NC_006146.1 + 3643 0.7 0.744474
Target:  5'- gCGCGGCcccGGGCCcuccccgacaucCAGGGACugGCCg -3'
miRNA:   3'- gGCGUCGc--CCCGGa-----------GUCUUUGugUGG- -5'
28773 5' -56.4 NC_006146.1 + 6453 0.72 0.617781
Target:  5'- gCGCGGCGGGGUUUCu----CACACa -3'
miRNA:   3'- gGCGUCGCCCCGGAGucuuuGUGUGg -5'
28773 5' -56.4 NC_006146.1 + 8675 0.66 0.918122
Target:  5'- aCCGCAGCu--GUC-CAGGAuCGCACCa -3'
miRNA:   3'- -GGCGUCGcccCGGaGUCUUuGUGUGG- -5'
28773 5' -56.4 NC_006146.1 + 10889 0.68 0.843218
Target:  5'- -aGaCAGCGGGGCggUGGGcAAUGCGCCa -3'
miRNA:   3'- ggC-GUCGCCCCGgaGUCU-UUGUGUGG- -5'
28773 5' -56.4 NC_006146.1 + 11754 0.67 0.880463
Target:  5'- aCCGgGGCaGGGCaa-GGAGAaGCGCCu -3'
miRNA:   3'- -GGCgUCGcCCCGgagUCUUUgUGUGG- -5'
28773 5' -56.4 NC_006146.1 + 12716 0.67 0.866169
Target:  5'- cCCGCGGCcauuGGGGCCagCAagcGAGACcaGCCc -3'
miRNA:   3'- -GGCGUCG----CCCCGGa-GU---CUUUGugUGG- -5'
28773 5' -56.4 NC_006146.1 + 13329 0.66 0.912409
Target:  5'- -gGCGGUGGagucggccgcGGCCUacgCGGAGGC-CACCu -3'
miRNA:   3'- ggCGUCGCC----------CCGGA---GUCUUUGuGUGG- -5'
28773 5' -56.4 NC_006146.1 + 14123 0.7 0.746378
Target:  5'- gCUGCuGGCGGcGGCCUacagcCAGGuguACGCGCUg -3'
miRNA:   3'- -GGCG-UCGCC-CCGGA-----GUCUu--UGUGUGG- -5'
28773 5' -56.4 NC_006146.1 + 15138 0.77 0.376659
Target:  5'- uCUGCGGCGGGGUCUaCAGcuccucGGGCgACGCCg -3'
miRNA:   3'- -GGCGUCGCCCCGGA-GUC------UUUG-UGUGG- -5'
28773 5' -56.4 NC_006146.1 + 15217 0.67 0.878373
Target:  5'- cCCGCAGUaccGGGCCauccugCAGAAgaggaacgagcuguACACGCg -3'
miRNA:   3'- -GGCGUCGc--CCCGGa-----GUCUU--------------UGUGUGg -5'
28773 5' -56.4 NC_006146.1 + 15399 0.72 0.617781
Target:  5'- -aGCAGUaccuacgccaGGuGGCCUCAGAGggGCugGCCc -3'
miRNA:   3'- ggCGUCG----------CC-CCGGAGUCUU--UGugUGG- -5'
28773 5' -56.4 NC_006146.1 + 15795 0.67 0.866169
Target:  5'- cCCGCGGCcauuGGGGCCagCAagcGAGACcaGCCc -3'
miRNA:   3'- -GGCGUCG----CCCCGGa-GU---CUUUGugUGG- -5'
28773 5' -56.4 NC_006146.1 + 18863 0.66 0.906467
Target:  5'- gCCGgGGUgguggacgugcgGGGGCCUCAGccccCACugUg -3'
miRNA:   3'- -GGCgUCG------------CCCCGGAGUCuuu-GUGugG- -5'
28773 5' -56.4 NC_006146.1 + 18873 0.67 0.866169
Target:  5'- cCCGCGGCcauuGGGGCCagCAagcGAGACcaGCCc -3'
miRNA:   3'- -GGCGUCG----CCCCGGa-GU---CUUUGugUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.