miRNA display CGI


Results 1 - 20 of 277 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28773 5' -56.4 NC_006146.1 + 170670 0.69 0.801368
Target:  5'- gCGCGGgGGaGGCC--AGggGCGCcCCg -3'
miRNA:   3'- gGCGUCgCC-CCGGagUCuuUGUGuGG- -5'
28773 5' -56.4 NC_006146.1 + 170519 0.77 0.368667
Target:  5'- gCGCggcgGGCGGGGCCUgaGGggGCGCGgCg -3'
miRNA:   3'- gGCG----UCGCCCCGGAg-UCuuUGUGUgG- -5'
28773 5' -56.4 NC_006146.1 + 170392 0.66 0.923605
Target:  5'- gCCG-GGCcuccccugGGGGCCUCGGggGCGgAg- -3'
miRNA:   3'- -GGCgUCG--------CCCCGGAGUCuuUGUgUgg -5'
28773 5' -56.4 NC_006146.1 + 170232 0.69 0.792523
Target:  5'- cCCGgGGCGGGGggUCGGGcgGGCAUGCUc -3'
miRNA:   3'- -GGCgUCGCCCCggAGUCU--UUGUGUGG- -5'
28773 5' -56.4 NC_006146.1 + 170190 0.71 0.657961
Target:  5'- cCCGagGGCGGGGCCggggccuggCGGggGCcaGCGCg -3'
miRNA:   3'- -GGCg-UCGCCCCGGa--------GUCuuUG--UGUGg -5'
28773 5' -56.4 NC_006146.1 + 170157 0.67 0.887294
Target:  5'- nCGCGGCGGcGCCggcCGGggGCugAg- -3'
miRNA:   3'- gGCGUCGCCcCGGa--GUCuuUGugUgg -5'
28773 5' -56.4 NC_006146.1 + 170109 0.7 0.724274
Target:  5'- gCCGCagggggggccGGCGGGGCgucccgucgucacgCUCGGcuGCACGCg -3'
miRNA:   3'- -GGCG----------UCGCCCCG--------------GAGUCuuUGUGUGg -5'
28773 5' -56.4 NC_006146.1 + 169588 0.74 0.53834
Target:  5'- gCGCgucgGGUGGGGCCUgaGGggGCGCGgCg -3'
miRNA:   3'- gGCG----UCGCCCCGGAg-UCuuUGUGUgG- -5'
28773 5' -56.4 NC_006146.1 + 169461 0.66 0.923605
Target:  5'- gCCG-GGCcuccccugGGGGCCUCGGggGCGgAg- -3'
miRNA:   3'- -GGCgUCG--------CCCCGGAGUCuuUGUgUgg -5'
28773 5' -56.4 NC_006146.1 + 169301 0.69 0.792523
Target:  5'- cCCGgGGCGGGGggUCGGGcgGGCAUGCUc -3'
miRNA:   3'- -GGCgUCGCCCCggAGUCU--UUGUGUGG- -5'
28773 5' -56.4 NC_006146.1 + 169259 0.71 0.657961
Target:  5'- cCCGagGGCGGGGCCggggccuggCGGggGCcaGCGCg -3'
miRNA:   3'- -GGCg-UCGCCCCGGa--------GUCuuUG--UGUGg -5'
28773 5' -56.4 NC_006146.1 + 169226 0.67 0.887294
Target:  5'- nCGCGGCGGcGCCggcCGGggGCugAg- -3'
miRNA:   3'- gGCGUCGCCcCGGa--GUCuuUGugUgg -5'
28773 5' -56.4 NC_006146.1 + 169189 0.67 0.871266
Target:  5'- -gGcCGGCGGGGCgucccgucgucacgCUCGGcuGCACGCg -3'
miRNA:   3'- ggC-GUCGCCCCG--------------GAGUCuuUGUGUGg -5'
28773 5' -56.4 NC_006146.1 + 168903 0.66 0.928858
Target:  5'- cCCGCAGCGcgacugucagcaGGuuCUCGGAGACGaggggGCCc -3'
miRNA:   3'- -GGCGUCGC------------CCcgGAGUCUUUGUg----UGG- -5'
28773 5' -56.4 NC_006146.1 + 168658 0.76 0.426995
Target:  5'- gCGuCGGUGGGGCCUgaGGggGCGCGgCg -3'
miRNA:   3'- gGC-GUCGCCCCGGAg-UCuuUGUGUgG- -5'
28773 5' -56.4 NC_006146.1 + 168529 0.66 0.923605
Target:  5'- gCCG-GGCcuccccugGGGGCCUCGGggGCGgAg- -3'
miRNA:   3'- -GGCgUCG--------CCCCGGAGUCuuUGUgUgg -5'
28773 5' -56.4 NC_006146.1 + 168369 0.69 0.792523
Target:  5'- cCCGgGGCGGGGggUCGGGcgGGCAUGCUc -3'
miRNA:   3'- -GGCgUCGCCCCggAGUCU--UUGUGUGG- -5'
28773 5' -56.4 NC_006146.1 + 168327 0.71 0.657961
Target:  5'- cCCGagGGCGGGGCCggggccuggCGGggGCcaGCGCg -3'
miRNA:   3'- -GGCg-UCGCCCCGGa--------GUCuuUG--UGUGg -5'
28773 5' -56.4 NC_006146.1 + 168294 0.67 0.887294
Target:  5'- nCGCGGCGGcGCCggcCGGggGCugAg- -3'
miRNA:   3'- gGCGUCGCCcCGGa--GUCuuUGugUgg -5'
28773 5' -56.4 NC_006146.1 + 168257 0.67 0.871266
Target:  5'- -gGcCGGCGGGGCgucccgucgucacgCUCGGcuGCACGCg -3'
miRNA:   3'- ggC-GUCGCCCCG--------------GAGUCuuUGUGUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.