Results 1 - 20 of 277 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28773 | 5' | -56.4 | NC_006146.1 | + | 126093 | 1.14 | 0.001522 |
Target: 5'- gCCGCAGCGGGGCCUCAGAAACACACCa -3' miRNA: 3'- -GGCGUCGCCCCGGAGUCUUUGUGUGG- -5' |
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28773 | 5' | -56.4 | NC_006146.1 | + | 33037 | 0.85 | 0.132423 |
Target: 5'- cCCGgGGCGGGGCC-CGG-GACACGCCc -3' miRNA: 3'- -GGCgUCGCCCCGGaGUCuUUGUGUGG- -5' |
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28773 | 5' | -56.4 | NC_006146.1 | + | 46077 | 0.82 | 0.183419 |
Target: 5'- gCUGCuGCaGGGCCUCGGggGCgaaGCACCg -3' miRNA: 3'- -GGCGuCGcCCCGGAGUCuuUG---UGUGG- -5' |
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28773 | 5' | -56.4 | NC_006146.1 | + | 147721 | 0.81 | 0.21756 |
Target: 5'- -gGCGGCGGGGCCUgGGuaauAGCGgGCCg -3' miRNA: 3'- ggCGUCGCCCCGGAgUCu---UUGUgUGG- -5' |
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28773 | 5' | -56.4 | NC_006146.1 | + | 155569 | 0.8 | 0.256992 |
Target: 5'- cUCGC-GCGGGGCgCccgcCAGggGCACACCg -3' miRNA: 3'- -GGCGuCGCCCCG-Ga---GUCuuUGUGUGG- -5' |
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28773 | 5' | -56.4 | NC_006146.1 | + | 54424 | 0.79 | 0.295287 |
Target: 5'- uCCGCGGUGgagaGGGUCUCGGAGAuUACGCCc -3' miRNA: 3'- -GGCGUCGC----CCCGGAGUCUUU-GUGUGG- -5' |
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28773 | 5' | -56.4 | NC_006146.1 | + | 22097 | 0.78 | 0.323201 |
Target: 5'- gCCGCGGCGGGuGUCaUCaucgGGAAAgGCACCg -3' miRNA: 3'- -GGCGUCGCCC-CGG-AG----UCUUUgUGUGG- -5' |
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28773 | 5' | -56.4 | NC_006146.1 | + | 34955 | 0.77 | 0.384767 |
Target: 5'- gCCGgAGCGGGGCagcggaccCAGggGCAC-CCg -3' miRNA: 3'- -GGCgUCGCCCCGga------GUCuuUGUGuGG- -5' |
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28773 | 5' | -56.4 | NC_006146.1 | + | 34398 | 0.77 | 0.384767 |
Target: 5'- gCCGgAGCGGGGCagcggaccCAGggGCAC-CCg -3' miRNA: 3'- -GGCgUCGCCCCGga------GUCuuUGUGuGG- -5' |
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28773 | 5' | -56.4 | NC_006146.1 | + | 35513 | 0.77 | 0.384767 |
Target: 5'- gCCGgAGCGGGGCagcggaccCAGggGCAC-CCg -3' miRNA: 3'- -GGCgUCGCCCCGga------GUCuuUGUGuGG- -5' |
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28773 | 5' | -56.4 | NC_006146.1 | + | 34863 | 0.77 | 0.384767 |
Target: 5'- gCCGgAGCGGGGCagcggaccCAGggGCAC-CCg -3' miRNA: 3'- -GGCgUCGCCCCGga------GUCuuUGUGuGG- -5' |
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28773 | 5' | -56.4 | NC_006146.1 | + | 34491 | 0.77 | 0.384767 |
Target: 5'- gCCGgAGCGGGGCagcggaccCAGggGCAC-CCg -3' miRNA: 3'- -GGCgUCGCCCCGga------GUCuuUGUGuGG- -5' |
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28773 | 5' | -56.4 | NC_006146.1 | + | 34677 | 0.77 | 0.384767 |
Target: 5'- gCCGgAGCGGGGCagcggaccCAGggGCAC-CCg -3' miRNA: 3'- -GGCgUCGCCCCGga------GUCuuUGUGuGG- -5' |
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28773 | 5' | -56.4 | NC_006146.1 | + | 34305 | 0.77 | 0.384767 |
Target: 5'- gCCGgAGCGGGGCagcggaccCAGggGCAC-CCg -3' miRNA: 3'- -GGCgUCGCCCCGga------GUCuuUGUGuGG- -5' |
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28773 | 5' | -56.4 | NC_006146.1 | + | 34770 | 0.77 | 0.384767 |
Target: 5'- gCCGgAGCGGGGCagcggaccCAGggGCAC-CCg -3' miRNA: 3'- -GGCgUCGCCCCGga------GUCuuUGUGuGG- -5' |
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28773 | 5' | -56.4 | NC_006146.1 | + | 35141 | 0.77 | 0.384767 |
Target: 5'- gCCGgAGCGGGGCagcggaccCAGggGCAC-CCg -3' miRNA: 3'- -GGCgUCGCCCCGga------GUCuuUGUGuGG- -5' |
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28773 | 5' | -56.4 | NC_006146.1 | + | 34584 | 0.77 | 0.384767 |
Target: 5'- gCCGgAGCGGGGCagcggaccCAGggGCAC-CCg -3' miRNA: 3'- -GGCgUCGCCCCGga------GUCuuUGUGuGG- -5' |
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28773 | 5' | -56.4 | NC_006146.1 | + | 35234 | 0.77 | 0.384767 |
Target: 5'- gCCGgAGCGGGGCagcggaccCAGggGCAC-CCg -3' miRNA: 3'- -GGCgUCGCCCCGga------GUCuuUGUGuGG- -5' |
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28773 | 5' | -56.4 | NC_006146.1 | + | 35606 | 0.77 | 0.384767 |
Target: 5'- gCCGgAGCGGGGCagcggaccCAGggGCAC-CCg -3' miRNA: 3'- -GGCgUCGCCCCGga------GUCuuUGUGuGG- -5' |
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28773 | 5' | -56.4 | NC_006146.1 | + | 35420 | 0.77 | 0.384767 |
Target: 5'- gCCGgAGCGGGGCagcggaccCAGggGCAC-CCg -3' miRNA: 3'- -GGCgUCGCCCCGga------GUCuuUGUGuGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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