Results 21 - 40 of 178 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28774 | 5' | -55.1 | NC_006146.1 | + | 148229 | 0.66 | 0.950796 |
Target: 5'- ---aGGUUCugGGUCAGuauGCAgaGGCCg -3' miRNA: 3'- ccgaCCAGGugUUAGUCu--CGUg-CCGG- -5' |
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28774 | 5' | -55.1 | NC_006146.1 | + | 148128 | 0.68 | 0.874765 |
Target: 5'- uGUUGGagugCCGCAugggcuucgugcugGUCAGGGCccgggucuucucuACGGCCa -3' miRNA: 3'- cCGACCa---GGUGU--------------UAGUCUCG-------------UGCCGG- -5' |
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28774 | 5' | -55.1 | NC_006146.1 | + | 147501 | 0.66 | 0.942121 |
Target: 5'- cGGCaGGUCCagcggaagGCAGUUAGAGaAC-GCCa -3' miRNA: 3'- -CCGaCCAGG--------UGUUAGUCUCgUGcCGG- -5' |
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28774 | 5' | -55.1 | NC_006146.1 | + | 147438 | 0.66 | 0.942121 |
Target: 5'- -cCUGG-CCACGGcCAGGGCcucguaGGCCg -3' miRNA: 3'- ccGACCaGGUGUUaGUCUCGug----CCGG- -5' |
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28774 | 5' | -55.1 | NC_006146.1 | + | 146645 | 0.74 | 0.603462 |
Target: 5'- aGGCcugGGUCCAUggUCAGAaaacaacccucccggGCgguggGCGGCCc -3' miRNA: 3'- -CCGa--CCAGGUGuuAGUCU---------------CG-----UGCCGG- -5' |
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28774 | 5' | -55.1 | NC_006146.1 | + | 146454 | 0.67 | 0.927349 |
Target: 5'- gGGC-GGUCCACAcaCGcGGGCGCaGCa -3' miRNA: 3'- -CCGaCCAGGUGUuaGU-CUCGUGcCGg -5' |
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28774 | 5' | -55.1 | NC_006146.1 | + | 140736 | 0.66 | 0.937433 |
Target: 5'- aGGUgcagGGguugCCGCucUCGGAuGCGUGGCCa -3' miRNA: 3'- -CCGa---CCa---GGUGuuAGUCU-CGUGCCGG- -5' |
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28774 | 5' | -55.1 | NC_006146.1 | + | 137770 | 0.67 | 0.921952 |
Target: 5'- cGCUGGUCCG--GUCcGGGUG-GGCCu -3' miRNA: 3'- cCGACCAGGUguUAGuCUCGUgCCGG- -5' |
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28774 | 5' | -55.1 | NC_006146.1 | + | 137570 | 0.66 | 0.950796 |
Target: 5'- uGCcgGGUCCGCugcccGGUCcuGGAGCucgGGCCg -3' miRNA: 3'- cCGa-CCAGGUG-----UUAG--UCUCGug-CCGG- -5' |
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28774 | 5' | -55.1 | NC_006146.1 | + | 137509 | 0.67 | 0.927349 |
Target: 5'- aGGCgGG-CCACcccccacccgGAgCGGGGCAgCGGCCc -3' miRNA: 3'- -CCGaCCaGGUG----------UUaGUCUCGU-GCCGG- -5' |
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28774 | 5' | -55.1 | NC_006146.1 | + | 137486 | 0.7 | 0.814187 |
Target: 5'- cGCUgcccGGUCCugGAgcUCGGGGCcgGgGGCCg -3' miRNA: 3'- cCGA----CCAGGugUU--AGUCUCG--UgCCGG- -5' |
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28774 | 5' | -55.1 | NC_006146.1 | + | 137393 | 0.7 | 0.814187 |
Target: 5'- cGCUgcccGGUCCugGAgcUCGGGGCcgGgGGCCg -3' miRNA: 3'- cCGA----CCAGGugUU--AGUCUCG--UgCCGG- -5' |
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28774 | 5' | -55.1 | NC_006146.1 | + | 137300 | 0.7 | 0.814187 |
Target: 5'- cGCUgcccGGUCCugGAgcUCGGGGCcgGgGGCCg -3' miRNA: 3'- cCGA----CCAGGugUU--AGUCUCG--UgCCGG- -5' |
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28774 | 5' | -55.1 | NC_006146.1 | + | 137207 | 0.7 | 0.814187 |
Target: 5'- cGCUgcccGGUCCugGAgcUCGGGGCcgGgGGCCg -3' miRNA: 3'- cCGA----CCAGGugUU--AGUCUCG--UgCCGG- -5' |
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28774 | 5' | -55.1 | NC_006146.1 | + | 137114 | 0.7 | 0.814187 |
Target: 5'- cGCUgcccGGUCCugGAgcUCGGGGCcgGgGGCCg -3' miRNA: 3'- cCGA----CCAGGugUU--AGUCUCG--UgCCGG- -5' |
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28774 | 5' | -55.1 | NC_006146.1 | + | 137021 | 0.7 | 0.814187 |
Target: 5'- cGCUgcccGGUCCugGAgcUCGGGGCcgGgGGCCg -3' miRNA: 3'- cCGA----CCAGGugUU--AGUCUCG--UgCCGG- -5' |
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28774 | 5' | -55.1 | NC_006146.1 | + | 136928 | 0.7 | 0.814187 |
Target: 5'- cGCUgcccGGUCCugGAgcUCGGGGCcgGgGGCCg -3' miRNA: 3'- cCGA----CCAGGugUU--AGUCUCG--UgCCGG- -5' |
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28774 | 5' | -55.1 | NC_006146.1 | + | 136835 | 0.7 | 0.814187 |
Target: 5'- cGCUgcccGGUCCugGAgcUCGGGGCcgGgGGCCg -3' miRNA: 3'- cCGA----CCAGGugUU--AGUCUCG--UgCCGG- -5' |
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28774 | 5' | -55.1 | NC_006146.1 | + | 136742 | 0.7 | 0.814187 |
Target: 5'- cGCUgcccGGUCCugGAgcUCGGGGCcgGgGGCCg -3' miRNA: 3'- cCGA----CCAGGugUU--AGUCUCG--UgCCGG- -5' |
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28774 | 5' | -55.1 | NC_006146.1 | + | 136650 | 0.7 | 0.814187 |
Target: 5'- cGCUgcccGGUCCugGAgcUCGGGGCcgGgGGCCg -3' miRNA: 3'- cCGA----CCAGGugUU--AGUCUCG--UgCCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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