miRNA display CGI


Results 21 - 40 of 178 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28774 5' -55.1 NC_006146.1 + 148229 0.66 0.950796
Target:  5'- ---aGGUUCugGGUCAGuauGCAgaGGCCg -3'
miRNA:   3'- ccgaCCAGGugUUAGUCu--CGUg-CCGG- -5'
28774 5' -55.1 NC_006146.1 + 148128 0.68 0.874765
Target:  5'- uGUUGGagugCCGCAugggcuucgugcugGUCAGGGCccgggucuucucuACGGCCa -3'
miRNA:   3'- cCGACCa---GGUGU--------------UAGUCUCG-------------UGCCGG- -5'
28774 5' -55.1 NC_006146.1 + 147501 0.66 0.942121
Target:  5'- cGGCaGGUCCagcggaagGCAGUUAGAGaAC-GCCa -3'
miRNA:   3'- -CCGaCCAGG--------UGUUAGUCUCgUGcCGG- -5'
28774 5' -55.1 NC_006146.1 + 147438 0.66 0.942121
Target:  5'- -cCUGG-CCACGGcCAGGGCcucguaGGCCg -3'
miRNA:   3'- ccGACCaGGUGUUaGUCUCGug----CCGG- -5'
28774 5' -55.1 NC_006146.1 + 146645 0.74 0.603462
Target:  5'- aGGCcugGGUCCAUggUCAGAaaacaacccucccggGCgguggGCGGCCc -3'
miRNA:   3'- -CCGa--CCAGGUGuuAGUCU---------------CG-----UGCCGG- -5'
28774 5' -55.1 NC_006146.1 + 146454 0.67 0.927349
Target:  5'- gGGC-GGUCCACAcaCGcGGGCGCaGCa -3'
miRNA:   3'- -CCGaCCAGGUGUuaGU-CUCGUGcCGg -5'
28774 5' -55.1 NC_006146.1 + 140736 0.66 0.937433
Target:  5'- aGGUgcagGGguugCCGCucUCGGAuGCGUGGCCa -3'
miRNA:   3'- -CCGa---CCa---GGUGuuAGUCU-CGUGCCGG- -5'
28774 5' -55.1 NC_006146.1 + 137770 0.67 0.921952
Target:  5'- cGCUGGUCCG--GUCcGGGUG-GGCCu -3'
miRNA:   3'- cCGACCAGGUguUAGuCUCGUgCCGG- -5'
28774 5' -55.1 NC_006146.1 + 137570 0.66 0.950796
Target:  5'- uGCcgGGUCCGCugcccGGUCcuGGAGCucgGGCCg -3'
miRNA:   3'- cCGa-CCAGGUG-----UUAG--UCUCGug-CCGG- -5'
28774 5' -55.1 NC_006146.1 + 137509 0.67 0.927349
Target:  5'- aGGCgGG-CCACcccccacccgGAgCGGGGCAgCGGCCc -3'
miRNA:   3'- -CCGaCCaGGUG----------UUaGUCUCGU-GCCGG- -5'
28774 5' -55.1 NC_006146.1 + 137486 0.7 0.814187
Target:  5'- cGCUgcccGGUCCugGAgcUCGGGGCcgGgGGCCg -3'
miRNA:   3'- cCGA----CCAGGugUU--AGUCUCG--UgCCGG- -5'
28774 5' -55.1 NC_006146.1 + 137393 0.7 0.814187
Target:  5'- cGCUgcccGGUCCugGAgcUCGGGGCcgGgGGCCg -3'
miRNA:   3'- cCGA----CCAGGugUU--AGUCUCG--UgCCGG- -5'
28774 5' -55.1 NC_006146.1 + 137300 0.7 0.814187
Target:  5'- cGCUgcccGGUCCugGAgcUCGGGGCcgGgGGCCg -3'
miRNA:   3'- cCGA----CCAGGugUU--AGUCUCG--UgCCGG- -5'
28774 5' -55.1 NC_006146.1 + 137207 0.7 0.814187
Target:  5'- cGCUgcccGGUCCugGAgcUCGGGGCcgGgGGCCg -3'
miRNA:   3'- cCGA----CCAGGugUU--AGUCUCG--UgCCGG- -5'
28774 5' -55.1 NC_006146.1 + 137114 0.7 0.814187
Target:  5'- cGCUgcccGGUCCugGAgcUCGGGGCcgGgGGCCg -3'
miRNA:   3'- cCGA----CCAGGugUU--AGUCUCG--UgCCGG- -5'
28774 5' -55.1 NC_006146.1 + 137021 0.7 0.814187
Target:  5'- cGCUgcccGGUCCugGAgcUCGGGGCcgGgGGCCg -3'
miRNA:   3'- cCGA----CCAGGugUU--AGUCUCG--UgCCGG- -5'
28774 5' -55.1 NC_006146.1 + 136928 0.7 0.814187
Target:  5'- cGCUgcccGGUCCugGAgcUCGGGGCcgGgGGCCg -3'
miRNA:   3'- cCGA----CCAGGugUU--AGUCUCG--UgCCGG- -5'
28774 5' -55.1 NC_006146.1 + 136835 0.7 0.814187
Target:  5'- cGCUgcccGGUCCugGAgcUCGGGGCcgGgGGCCg -3'
miRNA:   3'- cCGA----CCAGGugUU--AGUCUCG--UgCCGG- -5'
28774 5' -55.1 NC_006146.1 + 136742 0.7 0.814187
Target:  5'- cGCUgcccGGUCCugGAgcUCGGGGCcgGgGGCCg -3'
miRNA:   3'- cCGA----CCAGGugUU--AGUCUCG--UgCCGG- -5'
28774 5' -55.1 NC_006146.1 + 136650 0.7 0.814187
Target:  5'- cGCUgcccGGUCCugGAgcUCGGGGCcgGgGGCCg -3'
miRNA:   3'- cCGA----CCAGGugUU--AGUCUCG--UgCCGG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.