miRNA display CGI


Results 21 - 40 of 178 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28774 5' -55.1 NC_006146.1 + 117268 0.78 0.38346
Target:  5'- cGGCaGGUuccccaCCAuCAGUCGGuGCACGGCCc -3'
miRNA:   3'- -CCGaCCA------GGU-GUUAGUCuCGUGCCGG- -5'
28774 5' -55.1 NC_006146.1 + 135442 0.7 0.814187
Target:  5'- cGCUgcccGGUCCugGAgcUCGGGGCcgGgGGCCg -3'
miRNA:   3'- cCGA----CCAGGugUU--AGUCUCG--UgCCGG- -5'
28774 5' -55.1 NC_006146.1 + 135349 0.7 0.814187
Target:  5'- cGCUgcccGGUCCugGAgcUCGGGGCcgGgGGCCg -3'
miRNA:   3'- cCGA----CCAGGugUU--AGUCUCG--UgCCGG- -5'
28774 5' -55.1 NC_006146.1 + 169985 0.71 0.74999
Target:  5'- cGGCgcgcgcccggGGUCC-CGGggggCGGcGCGCGGCCu -3'
miRNA:   3'- -CCGa---------CCAGGuGUUa---GUCuCGUGCCGG- -5'
28774 5' -55.1 NC_006146.1 + 112572 0.72 0.700875
Target:  5'- aGGCUGGUCuCACAGau-GAGCAUcacaGCCa -3'
miRNA:   3'- -CCGACCAG-GUGUUaguCUCGUGc---CGG- -5'
28774 5' -55.1 NC_006146.1 + 136092 0.7 0.814187
Target:  5'- cGCUgcccGGUCCugGAgcUCGGGGCcgGgGGCCg -3'
miRNA:   3'- cCGA----CCAGGugUU--AGUCUCG--UgCCGG- -5'
28774 5' -55.1 NC_006146.1 + 135628 0.7 0.814187
Target:  5'- cGCUgcccGGUCCugGAgcUCGGGGCcgGgGGCCg -3'
miRNA:   3'- cCGA----CCAGGugUU--AGUCUCG--UgCCGG- -5'
28774 5' -55.1 NC_006146.1 + 67154 0.73 0.65032
Target:  5'- cGCUGG-CCGCuc-CuGAGCGCGGCg -3'
miRNA:   3'- cCGACCaGGUGuuaGuCUCGUGCCGg -5'
28774 5' -55.1 NC_006146.1 + 56561 0.7 0.7783
Target:  5'- aGGCccccGUCCACcuccGUCAGGG-GCGGCCg -3'
miRNA:   3'- -CCGac--CAGGUGu---UAGUCUCgUGCCGG- -5'
28774 5' -55.1 NC_006146.1 + 59917 0.7 0.768981
Target:  5'- uGCUGGUgCGCGGcUAcGAGCugGGUCu -3'
miRNA:   3'- cCGACCAgGUGUUaGU-CUCGugCCGG- -5'
28774 5' -55.1 NC_006146.1 + 55597 0.74 0.589255
Target:  5'- aGGuCUGGUCC-----CAGAGCAgGGCCu -3'
miRNA:   3'- -CC-GACCAGGuguuaGUCUCGUgCCGG- -5'
28774 5' -55.1 NC_006146.1 + 35225 0.74 0.573095
Target:  5'- gGGCUcugggagauauccuaGGUUUggACGgaaauaugaGUCAGAGCACGGCCg -3'
miRNA:   3'- -CCGA---------------CCAGG--UGU---------UAGUCUCGUGCCGG- -5'
28774 5' -55.1 NC_006146.1 + 136371 0.7 0.814187
Target:  5'- cGCUgcccGGUCCugGAgcUCGGGGCcgGgGGCCg -3'
miRNA:   3'- cCGA----CCAGGugUU--AGUCUCG--UgCCGG- -5'
28774 5' -55.1 NC_006146.1 + 136185 0.7 0.814187
Target:  5'- cGCUgcccGGUCCugGAgcUCGGGGCcgGgGGCCg -3'
miRNA:   3'- cCGA----CCAGGugUU--AGUCUCG--UgCCGG- -5'
28774 5' -55.1 NC_006146.1 + 135256 0.7 0.814187
Target:  5'- cGCUgcccGGUCCugGAgcUCGGGGCcgGgGGCCg -3'
miRNA:   3'- cCGA----CCAGGugUU--AGUCUCG--UgCCGG- -5'
28774 5' -55.1 NC_006146.1 + 66280 0.71 0.740336
Target:  5'- cGCgGGUCCuccUGAUCAGAuaGuCGCGGCCa -3'
miRNA:   3'- cCGaCCAGGu--GUUAGUCU--C-GUGCCGG- -5'
28774 5' -55.1 NC_006146.1 + 33607 0.71 0.720756
Target:  5'- gGGCgUGGUCCGCGGguUCGGuGCACcuggaaGGCa -3'
miRNA:   3'- -CCG-ACCAGGUGUU--AGUCuCGUG------CCGg -5'
28774 5' -55.1 NC_006146.1 + 114587 0.75 0.50976
Target:  5'- aGGCU-GUCCACGcUCAcuucguccAGCACGGCCa -3'
miRNA:   3'- -CCGAcCAGGUGUuAGUc-------UCGUGCCGG- -5'
28774 5' -55.1 NC_006146.1 + 58008 0.71 0.759542
Target:  5'- aGGCccgGGUCUcggccuuCGcgCAGAGCcCGGCCu -3'
miRNA:   3'- -CCGa--CCAGGu------GUuaGUCUCGuGCCGG- -5'
28774 5' -55.1 NC_006146.1 + 3801 0.7 0.787488
Target:  5'- --gUGGcCCACAGUCAGGuCugGGUCa -3'
miRNA:   3'- ccgACCaGGUGUUAGUCUcGugCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.