Results 1 - 20 of 178 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28774 | 5' | -55.1 | NC_006146.1 | + | 117268 | 0.78 | 0.38346 |
Target: 5'- cGGCaGGUuccccaCCAuCAGUCGGuGCACGGCCc -3' miRNA: 3'- -CCGaCCA------GGU-GUUAGUCuCGUGCCGG- -5' |
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28774 | 5' | -55.1 | NC_006146.1 | + | 167189 | 0.71 | 0.74999 |
Target: 5'- cGGCgcgcgcccggGGUCC-CGGggggCGGcGCGCGGCCu -3' miRNA: 3'- -CCGa---------CCAGGuGUUa---GUCuCGUGCCGG- -5' |
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28774 | 5' | -55.1 | NC_006146.1 | + | 169053 | 0.71 | 0.74999 |
Target: 5'- cGGCgcgcgcccggGGUCC-CGGggggCGGcGCGCGGCCu -3' miRNA: 3'- -CCGa---------CCAGGuGUUa---GUCuCGUGCCGG- -5' |
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28774 | 5' | -55.1 | NC_006146.1 | + | 149631 | 0.66 | 0.954788 |
Target: 5'- gGGC--GUCCGCcagcaccaGGUC-GAGCACGcGCCg -3' miRNA: 3'- -CCGacCAGGUG--------UUAGuCUCGUGC-CGG- -5' |
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28774 | 5' | -55.1 | NC_006146.1 | + | 114587 | 0.75 | 0.50976 |
Target: 5'- aGGCU-GUCCACGcUCAcuucguccAGCACGGCCa -3' miRNA: 3'- -CCGAcCAGGUGUuAGUc-------UCGUGCCGG- -5' |
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28774 | 5' | -55.1 | NC_006146.1 | + | 35225 | 0.74 | 0.573095 |
Target: 5'- gGGCUcugggagauauccuaGGUUUggACGgaaauaugaGUCAGAGCACGGCCg -3' miRNA: 3'- -CCGA---------------CCAGG--UGU---------UAGUCUCGUGCCGG- -5' |
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28774 | 5' | -55.1 | NC_006146.1 | + | 146645 | 0.74 | 0.603462 |
Target: 5'- aGGCcugGGUCCAUggUCAGAaaacaacccucccggGCgguggGCGGCCc -3' miRNA: 3'- -CCGa--CCAGGUGuuAGUCU---------------CG-----UGCCGG- -5' |
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28774 | 5' | -55.1 | NC_006146.1 | + | 67154 | 0.73 | 0.65032 |
Target: 5'- cGCUGG-CCGCuc-CuGAGCGCGGCg -3' miRNA: 3'- cCGACCaGGUGuuaGuCUCGUGCCGg -5' |
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28774 | 5' | -55.1 | NC_006146.1 | + | 53982 | 0.72 | 0.694862 |
Target: 5'- gGGgUGGUCUGCGAucccccggcuuucccUCAGGGC-CGGCa -3' miRNA: 3'- -CCgACCAGGUGUU---------------AGUCUCGuGCCGg -5' |
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28774 | 5' | -55.1 | NC_006146.1 | + | 41160 | 0.71 | 0.74999 |
Target: 5'- aGGaCUGGU-CGgGGUCGGAG-GCGGCCu -3' miRNA: 3'- -CC-GACCAgGUgUUAGUCUCgUGCCGG- -5' |
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28774 | 5' | -55.1 | NC_006146.1 | + | 33607 | 0.71 | 0.720756 |
Target: 5'- gGGCgUGGUCCGCGGguUCGGuGCACcuggaaGGCa -3' miRNA: 3'- -CCG-ACCAGGUGUU--AGUCuCGUG------CCGg -5' |
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28774 | 5' | -55.1 | NC_006146.1 | + | 41614 | 0.72 | 0.690844 |
Target: 5'- gGGCUGGUCCGCu----GGGCcCGGgCg -3' miRNA: 3'- -CCGACCAGGUGuuaguCUCGuGCCgG- -5' |
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28774 | 5' | -55.1 | NC_006146.1 | + | 61411 | 0.77 | 0.407914 |
Target: 5'- aGGCUGG-CUGCGGUgGccaacgcGGGCACGGCCg -3' miRNA: 3'- -CCGACCaGGUGUUAgU-------CUCGUGCCGG- -5' |
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28774 | 5' | -55.1 | NC_006146.1 | + | 128827 | 0.71 | 0.730589 |
Target: 5'- cGGCgcGGUCCAgGAgCAGguaAGCcCGGCCa -3' miRNA: 3'- -CCGa-CCAGGUgUUaGUC---UCGuGCCGG- -5' |
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28774 | 5' | -55.1 | NC_006146.1 | + | 49011 | 0.77 | 0.435106 |
Target: 5'- cGGCUaGGagCCGCAGggcguucucCGGGGCGCGGCCc -3' miRNA: 3'- -CCGA-CCa-GGUGUUa--------GUCUCGUGCCGG- -5' |
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28774 | 5' | -55.1 | NC_006146.1 | + | 95142 | 0.72 | 0.687824 |
Target: 5'- gGGCuUGGUCCGCcugaacUCggcggcgaugucggAGAGCACGGUCc -3' miRNA: 3'- -CCG-ACCAGGUGuu----AG--------------UCUCGUGCCGG- -5' |
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28774 | 5' | -55.1 | NC_006146.1 | + | 66280 | 0.71 | 0.740336 |
Target: 5'- cGCgGGUCCuccUGAUCAGAuaGuCGCGGCCa -3' miRNA: 3'- cCGaCCAGGu--GUUAGUCU--C-GUGCCGG- -5' |
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28774 | 5' | -55.1 | NC_006146.1 | + | 168121 | 0.71 | 0.74999 |
Target: 5'- cGGCgcgcgcccggGGUCC-CGGggggCGGcGCGCGGCCu -3' miRNA: 3'- -CCGa---------CCAGGuGUUa---GUCuCGUGCCGG- -5' |
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28774 | 5' | -55.1 | NC_006146.1 | + | 56237 | 0.76 | 0.444099 |
Target: 5'- aGCgGGUCCGCGGgggCGGAgGCGgGGCCg -3' miRNA: 3'- cCGaCCAGGUGUUa--GUCU-CGUgCCGG- -5' |
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28774 | 5' | -55.1 | NC_006146.1 | + | 55597 | 0.74 | 0.589255 |
Target: 5'- aGGuCUGGUCC-----CAGAGCAgGGCCu -3' miRNA: 3'- -CC-GACCAGGuguuaGUCUCGUgCCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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