miRNA display CGI


Results 1 - 20 of 178 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28774 5' -55.1 NC_006146.1 + 2606 0.67 0.921952
Target:  5'- gGGagaGGgaagcaacaCACAGUCuGGAGCACGGCUu -3'
miRNA:   3'- -CCga-CCag-------GUGUUAG-UCUCGUGCCGG- -5'
28774 5' -55.1 NC_006146.1 + 2966 0.69 0.855307
Target:  5'- cGCUGGacaCCGCGAgguacGAGUACGGCa -3'
miRNA:   3'- cCGACCa--GGUGUUagu--CUCGUGCCGg -5'
28774 5' -55.1 NC_006146.1 + 3801 0.7 0.787488
Target:  5'- --gUGGcCCACAGUCAGGuCugGGUCa -3'
miRNA:   3'- ccgACCaGGUGUUAGUCUcGugCCGG- -5'
28774 5' -55.1 NC_006146.1 + 13711 0.67 0.904342
Target:  5'- cGGCcucucgGGUCCAC---CAG-GC-CGGCCg -3'
miRNA:   3'- -CCGa-----CCAGGUGuuaGUCuCGuGCCGG- -5'
28774 5' -55.1 NC_006146.1 + 14560 0.71 0.720757
Target:  5'- uGCUGGgCCGCuuUCGGGGCGUGaGCCc -3'
miRNA:   3'- cCGACCaGGUGuuAGUCUCGUGC-CGG- -5'
28774 5' -55.1 NC_006146.1 + 14713 0.69 0.855307
Target:  5'- uGGC-GGUCC-CGGugaauUCGGAGC-CGGUCu -3'
miRNA:   3'- -CCGaCCAGGuGUU-----AGUCUCGuGCCGG- -5'
28774 5' -55.1 NC_006146.1 + 14815 0.67 0.910447
Target:  5'- cGGCcGGgCCGgAGg-AGGGCACGGUCu -3'
miRNA:   3'- -CCGaCCaGGUgUUagUCUCGUGCCGG- -5'
28774 5' -55.1 NC_006146.1 + 15142 0.67 0.921399
Target:  5'- cGGCggGGUCUACAGcuccUCGGgcgacgccguggaAGCGCugaaGGCCg -3'
miRNA:   3'- -CCGa-CCAGGUGUU----AGUC-------------UCGUG----CCGG- -5'
28774 5' -55.1 NC_006146.1 + 15587 0.68 0.8704
Target:  5'- aGGC-GcGUCgGCG---AGGGCGCGGCCu -3'
miRNA:   3'- -CCGaC-CAGgUGUuagUCUCGUGCCGG- -5'
28774 5' -55.1 NC_006146.1 + 16789 0.67 0.904342
Target:  5'- cGGCcucucgGGUCCAC---CAG-GC-CGGCCg -3'
miRNA:   3'- -CCGa-----CCAGGUGuuaGUCuCGuGCCGG- -5'
28774 5' -55.1 NC_006146.1 + 19712 0.72 0.670645
Target:  5'- -uCUGGUCCACGGgggaGGAgGC-CGGCCg -3'
miRNA:   3'- ccGACCAGGUGUUag--UCU-CGuGCCGG- -5'
28774 5' -55.1 NC_006146.1 + 19867 0.67 0.904342
Target:  5'- cGGCcucucgGGUCCAC---CAG-GC-CGGCCg -3'
miRNA:   3'- -CCGa-----CCAGGUGuuaGUCuCGuGCCGG- -5'
28774 5' -55.1 NC_006146.1 + 22945 0.66 0.937433
Target:  5'- cGGCcucucGGUCCAC---CAG-GC-CGGCCg -3'
miRNA:   3'- -CCGa----CCAGGUGuuaGUCuCGuGCCGG- -5'
28774 5' -55.1 NC_006146.1 + 24298 0.66 0.936951
Target:  5'- gGGCUGGacgcuguuuccccUCCACc--CAGAGCGCGacguuGUCg -3'
miRNA:   3'- -CCGACC-------------AGGUGuuaGUCUCGUGC-----CGG- -5'
28774 5' -55.1 NC_006146.1 + 24369 0.67 0.904342
Target:  5'- uGGCgcagGG-CCAgcucCAGGGCGCGGCg -3'
miRNA:   3'- -CCGa---CCaGGUguuaGUCUCGUGCCGg -5'
28774 5' -55.1 NC_006146.1 + 26022 0.67 0.904342
Target:  5'- cGGCcucucgGGUCCAC---CAG-GC-CGGCCg -3'
miRNA:   3'- -CCGa-----CCAGGUGuuaGUCuCGuGCCGG- -5'
28774 5' -55.1 NC_006146.1 + 29000 0.67 0.904342
Target:  5'- uGCcgGGUCCugGAaCAGcggcgcuccuaGGCACGGaCCa -3'
miRNA:   3'- cCGa-CCAGGugUUaGUC-----------UCGUGCC-GG- -5'
28774 5' -55.1 NC_006146.1 + 29100 0.67 0.904342
Target:  5'- cGGCcucucgGGUCCAC---CAG-GC-CGGCCg -3'
miRNA:   3'- -CCGa-----CCAGGUGuuaGUCuCGuGCCGG- -5'
28774 5' -55.1 NC_006146.1 + 33168 0.67 0.904342
Target:  5'- cGGCUGGgcaccgCCGCGccgccgcUCGGucCugGGCCu -3'
miRNA:   3'- -CCGACCa-----GGUGUu------AGUCucGugCCGG- -5'
28774 5' -55.1 NC_006146.1 + 33326 0.66 0.954788
Target:  5'- gGGCUccggGGUCCGgGugcucCGGGGCAgccgggUGGCCg -3'
miRNA:   3'- -CCGA----CCAGGUgUua---GUCUCGU------GCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.