miRNA display CGI


Results 1 - 20 of 178 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28774 5' -55.1 NC_006146.1 + 106656 0.66 0.954789
Target:  5'- cGGCUGGUCaggGCcGUCcucuccccGGGCACGGg- -3'
miRNA:   3'- -CCGACCAGg--UGuUAGu-------CUCGUGCCgg -5'
28774 5' -55.1 NC_006146.1 + 24298 0.66 0.936951
Target:  5'- gGGCUGGacgcuguuuccccUCCACc--CAGAGCGCGacguuGUCg -3'
miRNA:   3'- -CCGACC-------------AGGUGuuaGUCUCGUGC-----CGG- -5'
28774 5' -55.1 NC_006146.1 + 49606 0.66 0.932004
Target:  5'- uGGUgUGGaaCACAAUCuguccagagggcaGGuGCACGGCCc -3'
miRNA:   3'- -CCG-ACCagGUGUUAG-------------UCuCGUGCCGG- -5'
28774 5' -55.1 NC_006146.1 + 157114 0.66 0.932509
Target:  5'- cGGCgucGUCCAgAGUCAGcgaGGCGCacGCCu -3'
miRNA:   3'- -CCGac-CAGGUgUUAGUC---UCGUGc-CGG- -5'
28774 5' -55.1 NC_006146.1 + 22945 0.66 0.937433
Target:  5'- cGGCcucucGGUCCAC---CAG-GC-CGGCCg -3'
miRNA:   3'- -CCGa----CCAGGUGuuaGUCuCGuGCCGG- -5'
28774 5' -55.1 NC_006146.1 + 95321 0.66 0.937433
Target:  5'- aGGCgcggagGGUCUGgGAg-AGAuuuuGCGCGGCCa -3'
miRNA:   3'- -CCGa-----CCAGGUgUUagUCU----CGUGCCGG- -5'
28774 5' -55.1 NC_006146.1 + 140736 0.66 0.937433
Target:  5'- aGGUgcagGGguugCCGCucUCGGAuGCGUGGCCa -3'
miRNA:   3'- -CCGa---CCa---GGUGuuAGUCU-CGUGCCGG- -5'
28774 5' -55.1 NC_006146.1 + 100164 0.66 0.937433
Target:  5'- cGGCgGcGUCCGCGAggGGGGCAauaaGCCc -3'
miRNA:   3'- -CCGaC-CAGGUGUUagUCUCGUgc--CGG- -5'
28774 5' -55.1 NC_006146.1 + 147438 0.66 0.942121
Target:  5'- -cCUGG-CCACGGcCAGGGCcucguaGGCCg -3'
miRNA:   3'- ccGACCaGGUGUUaGUCUCGug----CCGG- -5'
28774 5' -55.1 NC_006146.1 + 73027 0.66 0.936951
Target:  5'- aGGCUcaGGcccucguUCCACGGccCGGGGUcgGCGGCCc -3'
miRNA:   3'- -CCGA--CC-------AGGUGUUa-GUCUCG--UGCCGG- -5'
28774 5' -55.1 NC_006146.1 + 124561 0.66 0.937433
Target:  5'- cGC-GGUCCuCAccuaccggcugGUCAGaAGCcCGGCCg -3'
miRNA:   3'- cCGaCCAGGuGU-----------UAGUC-UCGuGCCGG- -5'
28774 5' -55.1 NC_006146.1 + 168704 0.66 0.937433
Target:  5'- uGCUGGauuUCCGCGgaccauGUCgAGGGUcUGGCCa -3'
miRNA:   3'- cCGACC---AGGUGU------UAG-UCUCGuGCCGG- -5'
28774 5' -55.1 NC_006146.1 + 41391 0.66 0.954789
Target:  5'- cGGCcGcUCCACGAacccgCAGAcGUagACGGCCg -3'
miRNA:   3'- -CCGaCcAGGUGUUa----GUCU-CG--UGCCGG- -5'
28774 5' -55.1 NC_006146.1 + 114361 0.66 0.954789
Target:  5'- gGGcCUGGcCCGCGugacgcGUCAGcuGCugAUGGCCg -3'
miRNA:   3'- -CC-GACCaGGUGU------UAGUCu-CG--UGCCGG- -5'
28774 5' -55.1 NC_006146.1 + 109129 0.66 0.954789
Target:  5'- aGGCUGccGUCUugGgcAUCAGcAGCACcuGCCc -3'
miRNA:   3'- -CCGAC--CAGGugU--UAGUC-UCGUGc-CGG- -5'
28774 5' -55.1 NC_006146.1 + 52894 0.66 0.950796
Target:  5'- -aCUGGU-CACGGcCGuGAGCuACGGCCg -3'
miRNA:   3'- ccGACCAgGUGUUaGU-CUCG-UGCCGG- -5'
28774 5' -55.1 NC_006146.1 + 110882 0.66 0.950796
Target:  5'- gGGCUcGGg-CGCAggCGGGGaCGgGGCCg -3'
miRNA:   3'- -CCGA-CCagGUGUuaGUCUC-GUgCCGG- -5'
28774 5' -55.1 NC_006146.1 + 100029 0.66 0.950796
Target:  5'- cGGCggGGUCCGCGGcuUCu---CGCGGUCg -3'
miRNA:   3'- -CCGa-CCAGGUGUU--AGucucGUGCCGG- -5'
28774 5' -55.1 NC_006146.1 + 108235 0.66 0.942121
Target:  5'- uGGCgGGUaCCAgAGUcCAGAGgACGGaCa -3'
miRNA:   3'- -CCGaCCA-GGUgUUA-GUCUCgUGCCgG- -5'
28774 5' -55.1 NC_006146.1 + 114962 0.66 0.942121
Target:  5'- uGGCgggGGgcaCGCAG-CAGccCACGGCCg -3'
miRNA:   3'- -CCGa--CCag-GUGUUaGUCucGUGCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.