miRNA display CGI


Results 1 - 20 of 178 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28774 5' -55.1 NC_006146.1 + 124759 1.15 0.001742
Target:  5'- gGGCUGGUCCACAAUCAGAGCACGGCCa -3'
miRNA:   3'- -CCGACCAGGUGUUAGUCUCGUGCCGG- -5'
28774 5' -55.1 NC_006146.1 + 165956 0.84 0.171805
Target:  5'- uGGCcccUGGUCCcCGGggcaCAGAGCACGGCCa -3'
miRNA:   3'- -CCG---ACCAGGuGUUa---GUCUCGUGCCGG- -5'
28774 5' -55.1 NC_006146.1 + 117268 0.78 0.38346
Target:  5'- cGGCaGGUuccccaCCAuCAGUCGGuGCACGGCCc -3'
miRNA:   3'- -CCGaCCA------GGU-GUUAGUCuCGUGCCGG- -5'
28774 5' -55.1 NC_006146.1 + 61411 0.77 0.407914
Target:  5'- aGGCUGG-CUGCGGUgGccaacgcGGGCACGGCCg -3'
miRNA:   3'- -CCGACCaGGUGUUAgU-------CUCGUGCCGG- -5'
28774 5' -55.1 NC_006146.1 + 49011 0.77 0.435106
Target:  5'- cGGCUaGGagCCGCAGggcguucucCGGGGCGCGGCCc -3'
miRNA:   3'- -CCGA-CCa-GGUGUUa--------GUCUCGUGCCGG- -5'
28774 5' -55.1 NC_006146.1 + 118075 0.77 0.435106
Target:  5'- cGGCUcGGcccUCCGCAuccuGGGCACGGCCu -3'
miRNA:   3'- -CCGA-CC---AGGUGUuaguCUCGUGCCGG- -5'
28774 5' -55.1 NC_006146.1 + 56237 0.76 0.444099
Target:  5'- aGCgGGUCCGCGGgggCGGAgGCGgGGCCg -3'
miRNA:   3'- cCGaCCAGGUGUUa--GUCU-CGUgCCGG- -5'
28774 5' -55.1 NC_006146.1 + 47750 0.76 0.471687
Target:  5'- gGGCUGGcCCugGGgaCGGAGaGCGGCCu -3'
miRNA:   3'- -CCGACCaGGugUUa-GUCUCgUGCCGG- -5'
28774 5' -55.1 NC_006146.1 + 114587 0.75 0.50976
Target:  5'- aGGCU-GUCCACGcUCAcuucguccAGCACGGCCa -3'
miRNA:   3'- -CCGAcCAGGUGUuAGUc-------UCGUGCCGG- -5'
28774 5' -55.1 NC_006146.1 + 66495 0.75 0.519483
Target:  5'- aGGCUGGUgCugAcggAUUuuGGCACGGCCu -3'
miRNA:   3'- -CCGACCAgGugU---UAGucUCGUGCCGG- -5'
28774 5' -55.1 NC_006146.1 + 71236 0.75 0.529277
Target:  5'- uGGCUGGucaacUCCugGGgccuggCGGGGgGCGGCCu -3'
miRNA:   3'- -CCGACC-----AGGugUUa-----GUCUCgUGCCGG- -5'
28774 5' -55.1 NC_006146.1 + 127404 0.74 0.559041
Target:  5'- gGGCUGGgccCCGCcgcCGGAGCcggugucaACGGCCg -3'
miRNA:   3'- -CCGACCa--GGUGuuaGUCUCG--------UGCCGG- -5'
28774 5' -55.1 NC_006146.1 + 35225 0.74 0.573095
Target:  5'- gGGCUcugggagauauccuaGGUUUggACGgaaauaugaGUCAGAGCACGGCCg -3'
miRNA:   3'- -CCGA---------------CCAGG--UGU---------UAGUCUCGUGCCGG- -5'
28774 5' -55.1 NC_006146.1 + 55597 0.74 0.589255
Target:  5'- aGGuCUGGUCC-----CAGAGCAgGGCCu -3'
miRNA:   3'- -CC-GACCAGGuguuaGUCUCGUgCCGG- -5'
28774 5' -55.1 NC_006146.1 + 146645 0.74 0.603462
Target:  5'- aGGCcugGGUCCAUggUCAGAaaacaacccucccggGCgguggGCGGCCc -3'
miRNA:   3'- -CCGa--CCAGGUGuuAGUCU---------------CG-----UGCCGG- -5'
28774 5' -55.1 NC_006146.1 + 128247 0.73 0.608546
Target:  5'- gGGCgag-CCGCAGUUGGAGCaguacacGCGGCCg -3'
miRNA:   3'- -CCGaccaGGUGUUAGUCUCG-------UGCCGG- -5'
28774 5' -55.1 NC_006146.1 + 67154 0.73 0.65032
Target:  5'- cGCUGG-CCGCuc-CuGAGCGCGGCg -3'
miRNA:   3'- cCGACCaGGUGuuaGuCUCGUGCCGg -5'
28774 5' -55.1 NC_006146.1 + 19712 0.72 0.670645
Target:  5'- -uCUGGUCCACGGgggaGGAgGC-CGGCCg -3'
miRNA:   3'- ccGACCAGGUGUUag--UCU-CGuGCCGG- -5'
28774 5' -55.1 NC_006146.1 + 114701 0.72 0.670645
Target:  5'- cGGCUcGUCCGCGAgacCcGGGCccugGCGGCCg -3'
miRNA:   3'- -CCGAcCAGGUGUUa--GuCUCG----UGCCGG- -5'
28774 5' -55.1 NC_006146.1 + 167739 0.72 0.680764
Target:  5'- cGCaGGUgCuCGAUCAGGGCGCaggGGCCg -3'
miRNA:   3'- cCGaCCAgGuGUUAGUCUCGUG---CCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.