Results 41 - 60 of 70 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28775 | 5' | -61.6 | NC_006146.1 | + | 169375 | 0.67 | 0.571044 |
Target: 5'- -gGGgGCaggGCUGGCGCcgggccGCGCC-CCCg -3' miRNA: 3'- uaCUgCGa--CGACCGCG------UGCGGuGGGa -5' |
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28775 | 5' | -61.6 | NC_006146.1 | + | 168443 | 0.67 | 0.571044 |
Target: 5'- -gGGgGCaggGCUGGCGCcgggccGCGCC-CCCg -3' miRNA: 3'- uaCUgCGa--CGACCGCG------UGCGGuGGGa -5' |
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28775 | 5' | -61.6 | NC_006146.1 | + | 167511 | 0.67 | 0.571044 |
Target: 5'- -gGGgGCaggGCUGGCGCcgggccGCGCC-CCCg -3' miRNA: 3'- uaCUgCGa--CGACCGCG------UGCGGuGGGa -5' |
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28775 | 5' | -61.6 | NC_006146.1 | + | 11344 | 0.68 | 0.551459 |
Target: 5'- -aGACGCUGUacacgggccUGGCGCagGCGCUGCgCg -3' miRNA: 3'- uaCUGCGACG---------ACCGCG--UGCGGUGgGa -5' |
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28775 | 5' | -61.6 | NC_006146.1 | + | 126116 | 0.68 | 0.540774 |
Target: 5'- -aGACGCUGCgccccccUGaGCccgGCACGgCACCCUc -3' miRNA: 3'- uaCUGCGACG-------AC-CG---CGUGCgGUGGGA- -5' |
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28775 | 5' | -61.6 | NC_006146.1 | + | 159328 | 0.68 | 0.532084 |
Target: 5'- uUGAgGCUgGCcGGCGUcucguGCGCCGCCUc -3' miRNA: 3'- uACUgCGA-CGaCCGCG-----UGCGGUGGGa -5' |
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28775 | 5' | -61.6 | NC_006146.1 | + | 132061 | 0.68 | 0.522488 |
Target: 5'- --cGCGCUGCUGGaCGUGaGCUGCCCc -3' miRNA: 3'- uacUGCGACGACC-GCGUgCGGUGGGa -5' |
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28775 | 5' | -61.6 | NC_006146.1 | + | 56860 | 0.68 | 0.522488 |
Target: 5'- -cGGCaGCUuugGCUGGgGCugGCgGCCCc -3' miRNA: 3'- uaCUG-CGA---CGACCgCGugCGgUGGGa -5' |
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28775 | 5' | -61.6 | NC_006146.1 | + | 71705 | 0.68 | 0.522488 |
Target: 5'- -cGGCcuccCUGgaGGCGgACGCCACCUg -3' miRNA: 3'- uaCUGc---GACgaCCGCgUGCGGUGGGa -5' |
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28775 | 5' | -61.6 | NC_006146.1 | + | 128460 | 0.68 | 0.512959 |
Target: 5'- -cGGcCGCcaUGCUGGCgGCGCGC-ACCCa -3' miRNA: 3'- uaCU-GCG--ACGACCG-CGUGCGgUGGGa -5' |
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28775 | 5' | -61.6 | NC_006146.1 | + | 21802 | 0.68 | 0.512959 |
Target: 5'- -gGAUGCcg--GGCGCGCGCC-CCCg -3' miRNA: 3'- uaCUGCGacgaCCGCGUGCGGuGGGa -5' |
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28775 | 5' | -61.6 | NC_006146.1 | + | 55939 | 0.68 | 0.494122 |
Target: 5'- cGUGG-GCUGCUGcGUGCcccccgccauCGCCGCCCa -3' miRNA: 3'- -UACUgCGACGAC-CGCGu---------GCGGUGGGa -5' |
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28775 | 5' | -61.6 | NC_006146.1 | + | 116076 | 0.69 | 0.483898 |
Target: 5'- aAUGugGCgacgucCUGGUGCAUgguggcgGCCACCCg -3' miRNA: 3'- -UACugCGac----GACCGCGUG-------CGGUGGGa -5' |
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28775 | 5' | -61.6 | NC_006146.1 | + | 122850 | 0.69 | 0.466481 |
Target: 5'- -cGcACGCUGCccggGGCGCugGaCgACCCg -3' miRNA: 3'- uaC-UGCGACGa---CCGCGugC-GgUGGGa -5' |
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28775 | 5' | -61.6 | NC_006146.1 | + | 131219 | 0.69 | 0.439661 |
Target: 5'- -cGGCGCUGCaGGCccaggaGCcCGCCGCCUc -3' miRNA: 3'- uaCUGCGACGaCCG------CGuGCGGUGGGa -5' |
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28775 | 5' | -61.6 | NC_006146.1 | + | 157715 | 0.7 | 0.430918 |
Target: 5'- uUGAgcCGCUGCuUGGCGUAgGUCACCa- -3' miRNA: 3'- uACU--GCGACG-ACCGCGUgCGGUGGga -5' |
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28775 | 5' | -61.6 | NC_006146.1 | + | 102782 | 0.7 | 0.413743 |
Target: 5'- cGUGGCGCcGCUcccgcGGaccgGCugGCCGCCCa -3' miRNA: 3'- -UACUGCGaCGA-----CCg---CGugCGGUGGGa -5' |
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28775 | 5' | -61.6 | NC_006146.1 | + | 168112 | 0.7 | 0.396995 |
Target: 5'- -aGGC-CUGCUGGCGCcugGCGUCuuCCCUg -3' miRNA: 3'- uaCUGcGACGACCGCG---UGCGGu-GGGA- -5' |
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28775 | 5' | -61.6 | NC_006146.1 | + | 43219 | 0.73 | 0.286019 |
Target: 5'- -gGGCGCUGCUGGUGagaggaGCCcCCCUg -3' miRNA: 3'- uaCUGCGACGACCGCgug---CGGuGGGA- -5' |
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28775 | 5' | -61.6 | NC_006146.1 | + | 118955 | 0.73 | 0.285368 |
Target: 5'- -cGGCGCcaGUUGGCGCGCagaccgcaccgggGCCGCCCg -3' miRNA: 3'- uaCUGCGa-CGACCGCGUG-------------CGGUGGGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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