miRNA display CGI


Results 41 - 60 of 225 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28776 3' -65.9 NC_006146.1 + 122989 0.66 0.520396
Target:  5'- uCCUCCagGCCaCGggggacuucuUCUCGGAGCUGCUGa -3'
miRNA:   3'- cGGAGG--CGG-GC----------GGAGCCUCGGCGGCg -5'
28776 3' -65.9 NC_006146.1 + 42705 0.66 0.517685
Target:  5'- gGCCcggcgCCGCggcgccccccugggCCGCCUccCGGcGUCGCUGCa -3'
miRNA:   3'- -CGGa----GGCG--------------GGCGGA--GCCuCGGCGGCG- -5'
28776 3' -65.9 NC_006146.1 + 24396 0.66 0.512281
Target:  5'- cGCCUUCGCUCuCCggguuuacguuccaGGAgGCCGCCuGCa -3'
miRNA:   3'- -CGGAGGCGGGcGGag------------CCU-CGGCGG-CG- -5'
28776 3' -65.9 NC_006146.1 + 141883 0.66 0.511383
Target:  5'- uCCUUgGUCCguGCCUaGGAGC-GCCGCu -3'
miRNA:   3'- cGGAGgCGGG--CGGAgCCUCGgCGGCG- -5'
28776 3' -65.9 NC_006146.1 + 98699 0.66 0.511383
Target:  5'- gGCCgCUGgucuCCCGCCcauccGGCCGCCGCg -3'
miRNA:   3'- -CGGaGGC----GGGCGGagcc-UCGGCGGCG- -5'
28776 3' -65.9 NC_006146.1 + 130632 0.66 0.511383
Target:  5'- cGCCUCCGCCCGCgccucccuaCUaCGGAuCCcacCCGa -3'
miRNA:   3'- -CGGAGGCGGGCG---------GA-GCCUcGGc--GGCg -5'
28776 3' -65.9 NC_006146.1 + 62600 0.66 0.511383
Target:  5'- gGCgUCCGCCgcagGCaaugagCgGGAGCUGCUGCg -3'
miRNA:   3'- -CGgAGGCGGg---CGga----G-CCUCGGCGGCG- -5'
28776 3' -65.9 NC_006146.1 + 31752 0.66 0.505112
Target:  5'- uGCCUCCccuauguacaacacuGCCCccaccugcGCCaUCGGAGCCagcuccgggaauaGuCCGCa -3'
miRNA:   3'- -CGGAGG---------------CGGG--------CGG-AGCCUCGG-------------C-GGCG- -5'
28776 3' -65.9 NC_006146.1 + 33232 0.66 0.502435
Target:  5'- aGCCggguggCCGCCgGCggguccgcCGG-GCCGCUGCc -3'
miRNA:   3'- -CGGa-----GGCGGgCGga------GCCuCGGCGGCG- -5'
28776 3' -65.9 NC_006146.1 + 24757 0.66 0.502435
Target:  5'- aGCCUCCG-CCGCCUgCGuc-CCGCUGa -3'
miRNA:   3'- -CGGAGGCgGGCGGA-GCcucGGCGGCg -5'
28776 3' -65.9 NC_006146.1 + 48709 0.66 0.502435
Target:  5'- -nCUCCGUCCGCuCUCuGGccucCCGCuCGCg -3'
miRNA:   3'- cgGAGGCGGGCG-GAG-CCuc--GGCG-GCG- -5'
28776 3' -65.9 NC_006146.1 + 45539 0.66 0.502435
Target:  5'- gGCCUccuugggcuuggCCGCCCugGCCUCcgcgaGGAGCuCG-CGCa -3'
miRNA:   3'- -CGGA------------GGCGGG--CGGAG-----CCUCG-GCgGCG- -5'
28776 3' -65.9 NC_006146.1 + 795 0.66 0.501544
Target:  5'- cGCC-CCGCCgGCCcccccugCGGcGCCGgccccucCCGCc -3'
miRNA:   3'- -CGGaGGCGGgCGGa------GCCuCGGC-------GGCG- -5'
28776 3' -65.9 NC_006146.1 + 156097 0.66 0.497099
Target:  5'- uCCUCCgGCCCGgC-CGGccucuccuuccccucAGCCGCCa- -3'
miRNA:   3'- cGGAGG-CGGGCgGaGCC---------------UCGGCGGcg -5'
28776 3' -65.9 NC_006146.1 + 48224 0.66 0.493556
Target:  5'- gGCCUggCgCGCCugggugagCGCCgcgCGGAGggcccCCGCCGCc -3'
miRNA:   3'- -CGGA--G-GCGG--------GCGGa--GCCUC-----GGCGGCG- -5'
28776 3' -65.9 NC_006146.1 + 38669 0.66 0.493556
Target:  5'- aGgUUCUGCCCgGCCgCGaGAGCUGCCu- -3'
miRNA:   3'- -CgGAGGCGGG-CGGaGC-CUCGGCGGcg -5'
28776 3' -65.9 NC_006146.1 + 55921 0.66 0.493556
Target:  5'- gGCCUUgaUGUCCGCggcCGuGGGCUGCUGCg -3'
miRNA:   3'- -CGGAG--GCGGGCGga-GC-CUCGGCGGCG- -5'
28776 3' -65.9 NC_006146.1 + 117851 0.66 0.493556
Target:  5'- uCC-CCaCCCGCCccccuuaccucUCGGcGGCgGCCGCg -3'
miRNA:   3'- cGGaGGcGGGCGG-----------AGCC-UCGgCGGCG- -5'
28776 3' -65.9 NC_006146.1 + 64645 0.66 0.493556
Target:  5'- uCUUCCGCCgggGCCa-GGGGCaCGUCGCc -3'
miRNA:   3'- cGGAGGCGGg--CGGagCCUCG-GCGGCG- -5'
28776 3' -65.9 NC_006146.1 + 76934 0.67 0.48475
Target:  5'- aGCCgggugaacugCCGCUggagguCGCCUgggacggagagCGGAGCCccGCCGCc -3'
miRNA:   3'- -CGGa---------GGCGG------GCGGA-----------GCCUCGG--CGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.