miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28776 5' -56.3 NC_006146.1 + 10096 0.68 0.848067
Target:  5'- gUUugUGaGGAC-CCcGGUCgaGGCGUGGg -3'
miRNA:   3'- -AAugAC-CCUGaGGaCCAGg-CUGCACC- -5'
28776 5' -56.3 NC_006146.1 + 12878 0.66 0.89619
Target:  5'- -gGCUGGGcaggccgggucucgGgUCUgggGGUCUGugGUGGu -3'
miRNA:   3'- aaUGACCC--------------UgAGGa--CCAGGCugCACC- -5'
28776 5' -56.3 NC_006146.1 + 13503 0.68 0.828653
Target:  5'- -gGCUGGGAa-CCUGGgcuacuuuaugggCCGagGCGUGGa -3'
miRNA:   3'- aaUGACCCUgaGGACCa------------GGC--UGCACC- -5'
28776 5' -56.3 NC_006146.1 + 15956 0.67 0.890949
Target:  5'- -gGCUGGGcaggccggucucgGgUCUgggGGUCUGugGUGGu -3'
miRNA:   3'- aaUGACCC-------------UgAGGa--CCAGGCugCACC- -5'
28776 5' -56.3 NC_006146.1 + 19033 0.66 0.89619
Target:  5'- -gGCUGGGcaggccgggucucgGgUCUgggGGUCUGugGUGGu -3'
miRNA:   3'- aaUGACCC--------------UgAGGa--CCAGGCugCACC- -5'
28776 5' -56.3 NC_006146.1 + 22111 0.66 0.89619
Target:  5'- -gGCUGGGcaggccgggucucgGgUCUgggGGUCUGugGUGGu -3'
miRNA:   3'- aaUGACCC--------------UgAGGa--CCAGGCugCACC- -5'
28776 5' -56.3 NC_006146.1 + 23529 0.67 0.870778
Target:  5'- -aACUcGGGACUCCcGuGUCUGGCGg-- -3'
miRNA:   3'- aaUGA-CCCUGAGGaC-CAGGCUGCacc -5'
28776 5' -56.3 NC_006146.1 + 25189 0.66 0.89619
Target:  5'- -gGCUGGGcaggccgggucucgGgUCUgggGGUCUGugGUGGu -3'
miRNA:   3'- aaUGACCC--------------UgAGGa--CCAGGCugCACC- -5'
28776 5' -56.3 NC_006146.1 + 28267 0.66 0.89619
Target:  5'- -gGCUGGGcaggccgggucucgGgUCUgggGGUCUGugGUGGu -3'
miRNA:   3'- aaUGACCC--------------UgAGGa--CCAGGCugCACC- -5'
28776 5' -56.3 NC_006146.1 + 33322 0.73 0.552443
Target:  5'- --cCUGGGGCUCCggGGUCCGG-GUGc -3'
miRNA:   3'- aauGACCCUGAGGa-CCAGGCUgCACc -5'
28776 5' -56.3 NC_006146.1 + 33731 0.67 0.891612
Target:  5'- --uCUGGaGCUCCUccGGUCCGGugggUGUGGu -3'
miRNA:   3'- aauGACCcUGAGGA--CCAGGCU----GCACC- -5'
28776 5' -56.3 NC_006146.1 + 33763 0.71 0.652914
Target:  5'- -cGCUGGGuC-CgCUGGUCCGgguggGCGUGGu -3'
miRNA:   3'- aaUGACCCuGaG-GACCAGGC-----UGCACC- -5'
28776 5' -56.3 NC_006146.1 + 33949 0.71 0.652914
Target:  5'- -cGCUGGGuC-CgCUGGUCCGgguggGCGUGGu -3'
miRNA:   3'- aaUGACCCuGaG-GACCAGGC-----UGCACC- -5'
28776 5' -56.3 NC_006146.1 + 36370 0.67 0.884884
Target:  5'- --cCUGGGACgaUCCUGGacaUCUGAUGagaUGGa -3'
miRNA:   3'- aauGACCCUG--AGGACC---AGGCUGC---ACC- -5'
28776 5' -56.3 NC_006146.1 + 44813 0.66 0.910451
Target:  5'- aUACUGGGAcCUCUguagGGggCCGGCGc-- -3'
miRNA:   3'- aAUGACCCU-GAGGa---CCa-GGCUGCacc -5'
28776 5' -56.3 NC_006146.1 + 46883 0.73 0.572315
Target:  5'- ----aGGGGCUCCUGGgugUCCGACGa-- -3'
miRNA:   3'- aaugaCCCUGAGGACC---AGGCUGCacc -5'
28776 5' -56.3 NC_006146.1 + 52863 0.73 0.562356
Target:  5'- -cGCccgGGGGCUCCaGGUCCGugGUc- -3'
miRNA:   3'- aaUGa--CCCUGAGGaCCAGGCugCAcc -5'
28776 5' -56.3 NC_006146.1 + 58685 0.66 0.904399
Target:  5'- ----cGGGACgagcCCUGGUCgGAC-UGGu -3'
miRNA:   3'- aaugaCCCUGa---GGACCAGgCUGcACC- -5'
28776 5' -56.3 NC_006146.1 + 71237 0.68 0.840106
Target:  5'- -gGCUGGucaACUCCUGGggcCUGGCGgGGg -3'
miRNA:   3'- aaUGACCc--UGAGGACCa--GGCUGCaCC- -5'
28776 5' -56.3 NC_006146.1 + 80566 0.66 0.927219
Target:  5'- -cACUGGGACUCCUcGGUCUu------ -3'
miRNA:   3'- aaUGACCCUGAGGA-CCAGGcugcacc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.