Results 41 - 60 of 153 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
28777 | 3' | -61.4 | NC_006146.1 | + | 170099 | 0.67 | 0.619155 |
Target: 5'- aGGGGCCGgcgCcgCagGGGGGGCCggCGGGGc -3' miRNA: 3'- -CUCCGGUa--GuaGg-UCCUCCGG--GCCCU- -5' |
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28777 | 3' | -61.4 | NC_006146.1 | + | 131468 | 0.67 | 0.609302 |
Target: 5'- aGGGCCcagugCAcCCAGGuGGGUCUGGGGu -3' miRNA: 3'- cUCCGGua---GUaGGUCC-UCCGGGCCCU- -5' |
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28777 | 3' | -61.4 | NC_006146.1 | + | 151296 | 0.67 | 0.609302 |
Target: 5'- aAGGCCAgggcCGUgUAGGAGGgCCaGGAg -3' miRNA: 3'- cUCCGGUa---GUAgGUCCUCCgGGcCCU- -5' |
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28777 | 3' | -61.4 | NC_006146.1 | + | 128503 | 0.67 | 0.609302 |
Target: 5'- cGAGGaCggCGUCgGGGuGGCCCuGGGGc -3' miRNA: 3'- -CUCCgGuaGUAGgUCCuCCGGG-CCCU- -5' |
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28777 | 3' | -61.4 | NC_006146.1 | + | 41591 | 0.67 | 0.609302 |
Target: 5'- -uGGCCGagG--CGGaGAGGCCCGGGGg -3' miRNA: 3'- cuCCGGUagUagGUC-CUCCGGGCCCU- -5' |
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28777 | 3' | -61.4 | NC_006146.1 | + | 152036 | 0.67 | 0.608318 |
Target: 5'- uGAGGCCcccgcaCGUCCAccaccccGGcAGcGCCCGGGGu -3' miRNA: 3'- -CUCCGGua----GUAGGU-------CC-UC-CGGGCCCU- -5' |
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28777 | 3' | -61.4 | NC_006146.1 | + | 126296 | 0.67 | 0.599466 |
Target: 5'- -uGGCCAuucuaUCAUgcaaCGGGAaaggcagcGGCCCGGGGg -3' miRNA: 3'- cuCCGGU-----AGUAg---GUCCU--------CCGGGCCCU- -5' |
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28777 | 3' | -61.4 | NC_006146.1 | + | 44556 | 0.67 | 0.599466 |
Target: 5'- aGGGGCCGgggC-UCCGGGuGGCUgGcGGAa -3' miRNA: 3'- -CUCCGGUa--GuAGGUCCuCCGGgC-CCU- -5' |
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28777 | 3' | -61.4 | NC_006146.1 | + | 56284 | 0.67 | 0.599466 |
Target: 5'- gGAGGCCAggaCGUCCagcgccgccucgAGGuGGCCCaGGc -3' miRNA: 3'- -CUCCGGUa--GUAGG------------UCCuCCGGGcCCu -5' |
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28777 | 3' | -61.4 | NC_006146.1 | + | 75590 | 0.67 | 0.599466 |
Target: 5'- uGAGGCCGcCGUCCcgaucaagGGGGGGUaacgaaUGGGAg -3' miRNA: 3'- -CUCCGGUaGUAGG--------UCCUCCGg-----GCCCU- -5' |
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28777 | 3' | -61.4 | NC_006146.1 | + | 146828 | 0.67 | 0.599466 |
Target: 5'- cGAGGCCG-CG-CCAGcGuAGaGCCCGGGc -3' miRNA: 3'- -CUCCGGUaGUaGGUC-C-UC-CGGGCCCu -5' |
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28777 | 3' | -61.4 | NC_006146.1 | + | 63818 | 0.68 | 0.589651 |
Target: 5'- -uGGCCAcgacUAUCCAGGucuugccguGGCgCCGGGGa -3' miRNA: 3'- cuCCGGUa---GUAGGUCCu--------CCG-GGCCCU- -5' |
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28777 | 3' | -61.4 | NC_006146.1 | + | 41064 | 0.68 | 0.589651 |
Target: 5'- gGGGGCC-UCGggguggaGGGAGGCCaGGGAc -3' miRNA: 3'- -CUCCGGuAGUagg----UCCUCCGGgCCCU- -5' |
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28777 | 3' | -61.4 | NC_006146.1 | + | 88339 | 0.68 | 0.579865 |
Target: 5'- gGAGGCCGUUGggcCCAGGGGGUUaaaGGAg -3' miRNA: 3'- -CUCCGGUAGUa--GGUCCUCCGGgc-CCU- -5' |
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28777 | 3' | -61.4 | NC_006146.1 | + | 28079 | 0.68 | 0.579865 |
Target: 5'- uGGGCUucggggCAUUCuuGAGGCCCGGGu -3' miRNA: 3'- cUCCGGua----GUAGGucCUCCGGGCCCu -5' |
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28777 | 3' | -61.4 | NC_006146.1 | + | 67230 | 0.68 | 0.579865 |
Target: 5'- -cGGCCAggcaCAggaagCCAcGGAGGCUgGGGGg -3' miRNA: 3'- cuCCGGUa---GUa----GGU-CCUCCGGgCCCU- -5' |
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28777 | 3' | -61.4 | NC_006146.1 | + | 14809 | 0.68 | 0.576936 |
Target: 5'- aGAGGCCGgccgggCCGGaGgagggcacggucucGGGCCCGGGGc -3' miRNA: 3'- -CUCCGGUagua--GGUC-C--------------UCCGGGCCCU- -5' |
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28777 | 3' | -61.4 | NC_006146.1 | + | 103580 | 0.68 | 0.57401 |
Target: 5'- cGGGCCuggg-CCGGGcucagcgcggacguGGCCCGGGAg -3' miRNA: 3'- cUCCGGuaguaGGUCCu-------------CCGGGCCCU- -5' |
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28777 | 3' | -61.4 | NC_006146.1 | + | 149710 | 0.68 | 0.570114 |
Target: 5'- -uGGCCcgagaCCuGGGGGCCCGGGc -3' miRNA: 3'- cuCCGGuaguaGGuCCUCCGGGCCCu -5' |
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28777 | 3' | -61.4 | NC_006146.1 | + | 146633 | 0.68 | 0.570114 |
Target: 5'- -uGGCCcgagaCCuGGGGGCCCGGGc -3' miRNA: 3'- cuCCGGuaguaGGuCCUCCGGGCCCu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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