miRNA display CGI


Results 21 - 40 of 153 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28777 3' -61.4 NC_006146.1 + 37723 0.66 0.707371
Target:  5'- cGGGGCCAauguuuUCAcagaggaguUUCAGGcAGGUcuCCGGGAu -3'
miRNA:   3'- -CUCCGGU------AGU---------AGGUCC-UCCG--GGCCCU- -5'
28777 3' -61.4 NC_006146.1 + 38957 0.69 0.497715
Target:  5'- -uGGCCuuggCAUCCGGGuGGGCCCccagacucucgcagaGGGGg -3'
miRNA:   3'- cuCCGGua--GUAGGUCC-UCCGGG---------------CCCU- -5'
28777 3' -61.4 NC_006146.1 + 41064 0.68 0.589651
Target:  5'- gGGGGCC-UCGggguggaGGGAGGCCaGGGAc -3'
miRNA:   3'- -CUCCGGuAGUagg----UCCUCCGGgCCCU- -5'
28777 3' -61.4 NC_006146.1 + 41591 0.67 0.609302
Target:  5'- -uGGCCGagG--CGGaGAGGCCCGGGGg -3'
miRNA:   3'- cuCCGGUagUagGUC-CUCCGGGCCCU- -5'
28777 3' -61.4 NC_006146.1 + 41848 0.69 0.484809
Target:  5'- cGGGCCGUgG-CCAGG-GGCuaCCGGGGc -3'
miRNA:   3'- cUCCGGUAgUaGGUCCuCCG--GGCCCU- -5'
28777 3' -61.4 NC_006146.1 + 42581 0.66 0.678214
Target:  5'- aGGGCCAg----CAGGAccaGCCCGGGAa -3'
miRNA:   3'- cUCCGGUaguagGUCCUc--CGGGCCCU- -5'
28777 3' -61.4 NC_006146.1 + 43268 0.67 0.64874
Target:  5'- aGAGGCaCAgggCggCCuGGAGGUCCGGc- -3'
miRNA:   3'- -CUCCG-GUa--GuaGGuCCUCCGGGCCcu -5'
28777 3' -61.4 NC_006146.1 + 44556 0.67 0.599466
Target:  5'- aGGGGCCGgggC-UCCGGGuGGCUgGcGGAa -3'
miRNA:   3'- -CUCCGGUa--GuAGGUCCuCCGGgC-CCU- -5'
28777 3' -61.4 NC_006146.1 + 44945 0.71 0.397837
Target:  5'- -uGGCCAggggCG-CgGGGAGGcCCCGGGGg -3'
miRNA:   3'- cuCCGGUa---GUaGgUCCUCC-GGGCCCU- -5'
28777 3' -61.4 NC_006146.1 + 46608 0.66 0.707371
Target:  5'- uGGGGUUGUCggCCAGGucuuccaucaGGGCCUuGGGGg -3'
miRNA:   3'- -CUCCGGUAGuaGGUCC----------UCCGGG-CCCU- -5'
28777 3' -61.4 NC_006146.1 + 48340 0.67 0.638881
Target:  5'- uGGGCCAggCGUCCAGucuGGCCagCGGGc -3'
miRNA:   3'- cUCCGGUa-GUAGGUCcu-CCGG--GCCCu -5'
28777 3' -61.4 NC_006146.1 + 48581 0.66 0.707371
Target:  5'- cGGGGCC-UCGggggUCAgGGAGGCCagaaGGGu -3'
miRNA:   3'- -CUCCGGuAGUa---GGU-CCUCCGGg---CCCu -5'
28777 3' -61.4 NC_006146.1 + 49048 0.69 0.492164
Target:  5'- cGAGaCCGUCGcgucguagacagCCAGGAGaCCCGGGAg -3'
miRNA:   3'- -CUCcGGUAGUa-----------GGUCCUCcGGGCCCU- -5'
28777 3' -61.4 NC_006146.1 + 49857 0.71 0.40608
Target:  5'- gGAGGUCGUCAaagUCCaucaccgucGGGAGGCUgGGGu -3'
miRNA:   3'- -CUCCGGUAGU---AGG---------UCCUCCGGgCCCu -5'
28777 3' -61.4 NC_006146.1 + 51572 0.71 0.414431
Target:  5'- uGGGCg--CcgCCGGGAggGGCCCGGGGg -3'
miRNA:   3'- cUCCGguaGuaGGUCCU--CCGGGCCCU- -5'
28777 3' -61.4 NC_006146.1 + 51831 0.66 0.668414
Target:  5'- cGGGGCgG-CGUggaGGGGGGCUCGGGGc -3'
miRNA:   3'- -CUCCGgUaGUAgg-UCCUCCGGGCCCU- -5'
28777 3' -61.4 NC_006146.1 + 52687 0.66 0.687979
Target:  5'- cAGGaCAUCGUCCagcuccgggcGGGAGGUCaGGGGg -3'
miRNA:   3'- cUCCgGUAGUAGG----------UCCUCCGGgCCCU- -5'
28777 3' -61.4 NC_006146.1 + 53315 0.7 0.439232
Target:  5'- -uGGCCGgaGUCCgagcccgAGGAGGCCCGGcGGc -3'
miRNA:   3'- cuCCGGUagUAGG-------UCCUCCGGGCC-CU- -5'
28777 3' -61.4 NC_006146.1 + 53448 0.67 0.629017
Target:  5'- aGGGCgGUgGUgucugcCCGGGAGGCgCGGGu -3'
miRNA:   3'- cUCCGgUAgUA------GGUCCUCCGgGCCCu -5'
28777 3' -61.4 NC_006146.1 + 53673 0.74 0.250864
Target:  5'- -cGGCCGcuuUCCAGGAaGCCCGGGGg -3'
miRNA:   3'- cuCCGGUaguAGGUCCUcCGGGCCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.