miRNA display CGI


Results 1 - 20 of 153 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28777 3' -61.4 NC_006146.1 + 512 0.69 0.503293
Target:  5'- cGAGGCCccCAg--GGGAGGCCCGGc- -3'
miRNA:   3'- -CUCCGGuaGUaggUCCUCCGGGCCcu -5'
28777 3' -61.4 NC_006146.1 + 856 0.72 0.343229
Target:  5'- cGGGCCcuccccgaCAUCCAGGGacuGGCCgCGGGAg -3'
miRNA:   3'- cUCCGGua------GUAGGUCCU---CCGG-GCCCU- -5'
28777 3' -61.4 NC_006146.1 + 1193 0.66 0.6977
Target:  5'- uGAGcGCCcaccCGUgaGGGGGaGCCCGGGAa -3'
miRNA:   3'- -CUC-CGGua--GUAggUCCUC-CGGGCCCU- -5'
28777 3' -61.4 NC_006146.1 + 1443 0.69 0.503293
Target:  5'- cGAGGCCccCAg--GGGAGGCCCGGc- -3'
miRNA:   3'- -CUCCGGuaGUaggUCCUCCGGGCCcu -5'
28777 3' -61.4 NC_006146.1 + 1788 0.72 0.343229
Target:  5'- cGGGCCcuccccgaCAUCCAGGGacuGGCCgCGGGAg -3'
miRNA:   3'- cUCCGGua------GUAGGUCCU---CCGG-GCCCU- -5'
28777 3' -61.4 NC_006146.1 + 2125 0.66 0.6977
Target:  5'- uGAGcGCCcaccCGUgaGGGGGaGCCCGGGAa -3'
miRNA:   3'- -CUC-CGGua--GUAggUCCUC-CGGGCCCU- -5'
28777 3' -61.4 NC_006146.1 + 2375 0.69 0.503293
Target:  5'- cGAGGCCccCAg--GGGAGGCCCGGc- -3'
miRNA:   3'- -CUCCGGuaGUaggUCCUCCGGGCCcu -5'
28777 3' -61.4 NC_006146.1 + 2720 0.72 0.343229
Target:  5'- cGGGCCcuccccgaCAUCCAGGGacuGGCCgCGGGAg -3'
miRNA:   3'- cUCCGGua------GUAGGUCCU---CCGG-GCCCU- -5'
28777 3' -61.4 NC_006146.1 + 3057 0.66 0.6977
Target:  5'- uGAGcGCCcaccCGUgaGGGGGaGCCCGGGAa -3'
miRNA:   3'- -CUC-CGGua--GUAggUCCUC-CGGGCCCU- -5'
28777 3' -61.4 NC_006146.1 + 3307 0.69 0.503293
Target:  5'- cGAGGCCccCAg--GGGAGGCCCGGc- -3'
miRNA:   3'- -CUCCGGuaGUaggUCCUCCGGGCCcu -5'
28777 3' -61.4 NC_006146.1 + 3652 0.72 0.343229
Target:  5'- cGGGCCcuccccgaCAUCCAGGGacuGGCCgCGGGAg -3'
miRNA:   3'- cUCCGGua------GUAGGUCCU---CCGG-GCCCU- -5'
28777 3' -61.4 NC_006146.1 + 7914 0.71 0.389701
Target:  5'- gGAGGCCGagGagaAGGGGGaCCCGGGAa -3'
miRNA:   3'- -CUCCGGUagUaggUCCUCC-GGGCCCU- -5'
28777 3' -61.4 NC_006146.1 + 14809 0.68 0.576936
Target:  5'- aGAGGCCGgccgggCCGGaGgagggcacggucucGGGCCCGGGGc -3'
miRNA:   3'- -CUCCGGUagua--GGUC-C--------------UCCGGGCCCU- -5'
28777 3' -61.4 NC_006146.1 + 19965 0.7 0.431444
Target:  5'- aGGGCCGggggCGUCugcgagguCAGGAGGCCCcacgacgccGGGAa -3'
miRNA:   3'- cUCCGGUa---GUAG--------GUCCUCCGGG---------CCCU- -5'
28777 3' -61.4 NC_006146.1 + 22104 0.68 0.570114
Target:  5'- cGGGuGUCAUCAU-CGGGAaaGGCaCCGGGGa -3'
miRNA:   3'- -CUC-CGGUAGUAgGUCCU--CCG-GGCCCU- -5'
28777 3' -61.4 NC_006146.1 + 26112 0.72 0.365957
Target:  5'- gGAGGCCAcaauUgGUCCAuGGAaaGGCaCCGGGGc -3'
miRNA:   3'- -CUCCGGU----AgUAGGU-CCU--CCG-GGCCCU- -5'
28777 3' -61.4 NC_006146.1 + 26296 0.67 0.638881
Target:  5'- aGGGGCCggCAUCU-GGAGGCgUGGa- -3'
miRNA:   3'- -CUCCGGuaGUAGGuCCUCCGgGCCcu -5'
28777 3' -61.4 NC_006146.1 + 28079 0.68 0.579865
Target:  5'- uGGGCUucggggCAUUCuuGAGGCCCGGGu -3'
miRNA:   3'- cUCCGGua----GUAGGucCUCCGGGCCCu -5'
28777 3' -61.4 NC_006146.1 + 32933 0.69 0.51265
Target:  5'- -cGGCCc----CCGGGAGGCCCGGc- -3'
miRNA:   3'- cuCCGGuaguaGGUCCUCCGGGCCcu -5'
28777 3' -61.4 NC_006146.1 + 33031 0.66 0.678214
Target:  5'- --uGCCGgc--CCGGGgcgGGGCCCGGGAc -3'
miRNA:   3'- cucCGGUaguaGGUCC---UCCGGGCCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.