miRNA display CGI


Results 1 - 20 of 153 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28777 3' -61.4 NC_006146.1 + 123587 1.08 0.001183
Target:  5'- gGAGGCCAUCAUCCAGGAGGCCCGGGAg -3'
miRNA:   3'- -CUCCGGUAGUAGGUCCUCCGGGCCCU- -5'
28777 3' -61.4 NC_006146.1 + 167642 0.77 0.175669
Target:  5'- cGGGGCCcggcgCGUgCCGGG-GGCCCGGGGg -3'
miRNA:   3'- -CUCCGGua---GUA-GGUCCuCCGGGCCCU- -5'
28777 3' -61.4 NC_006146.1 + 94790 0.76 0.188901
Target:  5'- cGGGCCA-CGUCCacguAGGccAGGCCCGGGGg -3'
miRNA:   3'- cUCCGGUaGUAGG----UCC--UCCGGGCCCU- -5'
28777 3' -61.4 NC_006146.1 + 105173 0.76 0.203002
Target:  5'- aGAGGCCGcacCGUCCAGugaccGGGGCCgGGGAg -3'
miRNA:   3'- -CUCCGGUa--GUAGGUC-----CUCCGGgCCCU- -5'
28777 3' -61.4 NC_006146.1 + 114224 0.75 0.218008
Target:  5'- aGGGCCAgcc-CCAGGGGGCCCGGc- -3'
miRNA:   3'- cUCCGGUaguaGGUCCUCCGGGCCcu -5'
28777 3' -61.4 NC_006146.1 + 64703 0.75 0.218008
Target:  5'- cAGGCCcugg--CAGGAGGCCCGGGAc -3'
miRNA:   3'- cUCCGGuaguagGUCCUCCGGGCCCU- -5'
28777 3' -61.4 NC_006146.1 + 148492 0.75 0.238922
Target:  5'- cGAGGCCGggCAggCCGGGcaggccgggucuuGGGCCUGGGAg -3'
miRNA:   3'- -CUCCGGUa-GUa-GGUCC-------------UCCGGGCCCU- -5'
28777 3' -61.4 NC_006146.1 + 151570 0.75 0.238922
Target:  5'- cGAGGCCGggCAggCCGGGcaggccgggucuuGGGCCUGGGAg -3'
miRNA:   3'- -CUCCGGUa-GUa-GGUCC-------------UCCGGGCCCU- -5'
28777 3' -61.4 NC_006146.1 + 145414 0.75 0.238922
Target:  5'- cGAGGCCGggCAggCCGGGcaggccgggucuuGGGCCUGGGAg -3'
miRNA:   3'- -CUCCGGUa-GUa-GGUCC-------------UCCGGGCCCU- -5'
28777 3' -61.4 NC_006146.1 + 157725 0.75 0.238922
Target:  5'- cGAGGCCGggCAggCCGGGcaggccgggucuuGGGCCUGGGAg -3'
miRNA:   3'- -CUCCGGUa-GUa-GGUCC-------------UCCGGGCCCU- -5'
28777 3' -61.4 NC_006146.1 + 154648 0.75 0.238922
Target:  5'- cGAGGCCGggCAggCCGGGcaggccgggucuuGGGCCUGGGAg -3'
miRNA:   3'- -CUCCGGUa-GUa-GGUCC-------------UCCGGGCCCU- -5'
28777 3' -61.4 NC_006146.1 + 142336 0.75 0.238922
Target:  5'- cGAGGCCGggCAggCCGGGcaggccgggucuuGGGCCUGGGAg -3'
miRNA:   3'- -CUCCGGUa-GUa-GGUCC-------------UCCGGGCCCU- -5'
28777 3' -61.4 NC_006146.1 + 53673 0.74 0.250864
Target:  5'- -cGGCCGcuuUCCAGGAaGCCCGGGGg -3'
miRNA:   3'- cuCCGGUaguAGGUCCUcCGGGCCCU- -5'
28777 3' -61.4 NC_006146.1 + 167593 0.73 0.287696
Target:  5'- gGAGGCCGggCcUCCccuGGGGGCCuCGGGGg -3'
miRNA:   3'- -CUCCGGUa-GuAGGu--CCUCCGG-GCCCU- -5'
28777 3' -61.4 NC_006146.1 + 168525 0.73 0.287696
Target:  5'- gGAGGCCGggCcUCCccuGGGGGCCuCGGGGg -3'
miRNA:   3'- -CUCCGGUa-GuAGGu--CCUCCGG-GCCCU- -5'
28777 3' -61.4 NC_006146.1 + 169419 0.73 0.287696
Target:  5'- gGAGGCCAcg--UguGGAGGCCCGcGGAg -3'
miRNA:   3'- -CUCCGGUaguaGguCCUCCGGGC-CCU- -5'
28777 3' -61.4 NC_006146.1 + 169457 0.73 0.287696
Target:  5'- gGAGGCCGggCcUCCccuGGGGGCCuCGGGGg -3'
miRNA:   3'- -CUCCGGUa-GuAGGu--CCUCCGG-GCCCU- -5'
28777 3' -61.4 NC_006146.1 + 170350 0.73 0.287696
Target:  5'- gGAGGCCAcg--UguGGAGGCCCGcGGAg -3'
miRNA:   3'- -CUCCGGUaguaGguCCUCCGGGC-CCU- -5'
28777 3' -61.4 NC_006146.1 + 168487 0.73 0.287696
Target:  5'- gGAGGCCAcg--UguGGAGGCCCGcGGAg -3'
miRNA:   3'- -CUCCGGUaguaGguCCUCCGGGC-CCU- -5'
28777 3' -61.4 NC_006146.1 + 167555 0.73 0.287696
Target:  5'- gGAGGCCAcg--UguGGAGGCCCGcGGAg -3'
miRNA:   3'- -CUCCGGUaguaGguCCUCCGGGC-CCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.