miRNA display CGI


Results 1 - 20 of 153 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28777 3' -61.4 NC_006146.1 + 114729 0.66 0.707371
Target:  5'- -cGGCCGaguaucggcgCAUCCucaAGGAcGGCCgCGGGGa -3'
miRNA:   3'- cuCCGGUa---------GUAGG---UCCU-CCGG-GCCCU- -5'
28777 3' -61.4 NC_006146.1 + 51831 0.66 0.668414
Target:  5'- cGGGGCgG-CGUggaGGGGGGCUCGGGGc -3'
miRNA:   3'- -CUCCGgUaGUAgg-UCCUCCGGGCCCU- -5'
28777 3' -61.4 NC_006146.1 + 164229 0.66 0.687979
Target:  5'- cGGGCCAUUGUuaccaccaUCAGuGGGGCCUGGuGGg -3'
miRNA:   3'- cUCCGGUAGUA--------GGUC-CUCCGGGCC-CU- -5'
28777 3' -61.4 NC_006146.1 + 48581 0.66 0.707371
Target:  5'- cGGGGCC-UCGggggUCAgGGAGGCCagaaGGGu -3'
miRNA:   3'- -CUCCGGuAGUa---GGU-CCUCCGGg---CCCu -5'
28777 3' -61.4 NC_006146.1 + 118970 0.66 0.667433
Target:  5'- uGAGGCCAU-GUCUcacgguaAGGAGGagCUGGGGg -3'
miRNA:   3'- -CUCCGGUAgUAGG-------UCCUCCg-GGCCCU- -5'
28777 3' -61.4 NC_006146.1 + 167303 0.66 0.668414
Target:  5'- aGGGGCCggCG-CCugcagGGGGGGCCggCGGGGc -3'
miRNA:   3'- -CUCCGGuaGUaGG-----UCCUCCGG--GCCCU- -5'
28777 3' -61.4 NC_006146.1 + 168235 0.66 0.668414
Target:  5'- aGGGGCCggCG-CCugcagGGGGGGCCggCGGGGc -3'
miRNA:   3'- -CUCCGGuaGUaGG-----UCCUCCGG--GCCCU- -5'
28777 3' -61.4 NC_006146.1 + 146631 0.66 0.678214
Target:  5'- -cGGCCAggGUCac-GAGGCCUGGGu -3'
miRNA:   3'- cuCCGGUagUAGgucCUCCGGGCCCu -5'
28777 3' -61.4 NC_006146.1 + 169167 0.66 0.668414
Target:  5'- aGGGGCCggCG-CCugcagGGGGGGCCggCGGGGc -3'
miRNA:   3'- -CUCCGGuaGUaGG-----UCCUCCGG--GCCCU- -5'
28777 3' -61.4 NC_006146.1 + 102569 0.66 0.658587
Target:  5'- gGAGGCCGUCcucgacgccAUCCucucGcGGCCCGaGGAg -3'
miRNA:   3'- -CUCCGGUAG---------UAGGuc--CuCCGGGC-CCU- -5'
28777 3' -61.4 NC_006146.1 + 42581 0.66 0.678214
Target:  5'- aGGGCCAg----CAGGAccaGCCCGGGAa -3'
miRNA:   3'- cUCCGGUaguagGUCCUc--CGGGCCCU- -5'
28777 3' -61.4 NC_006146.1 + 33031 0.66 0.678214
Target:  5'- --uGCCGgc--CCGGGgcgGGGCCCGGGAc -3'
miRNA:   3'- cucCGGUaguaGGUCC---UCCGGGCCCU- -5'
28777 3' -61.4 NC_006146.1 + 57210 0.66 0.6977
Target:  5'- --cGCCGUCc-CCGGGccggaggccGGGCCCGGGc -3'
miRNA:   3'- cucCGGUAGuaGGUCC---------UCCGGGCCCu -5'
28777 3' -61.4 NC_006146.1 + 122628 0.66 0.6977
Target:  5'- gGAGGCCGgggcccucuuUCGcgCCAGGAcGGCggCGGGGg -3'
miRNA:   3'- -CUCCGGU----------AGUa-GGUCCU-CCGg-GCCCU- -5'
28777 3' -61.4 NC_006146.1 + 122517 0.66 0.6977
Target:  5'- gGAGGCCG-CGgagcCCGGGuGGUUCGcGGAa -3'
miRNA:   3'- -CUCCGGUaGUa---GGUCCuCCGGGC-CCU- -5'
28777 3' -61.4 NC_006146.1 + 3057 0.66 0.6977
Target:  5'- uGAGcGCCcaccCGUgaGGGGGaGCCCGGGAa -3'
miRNA:   3'- -CUC-CGGua--GUAggUCCUC-CGGGCCCU- -5'
28777 3' -61.4 NC_006146.1 + 2125 0.66 0.6977
Target:  5'- uGAGcGCCcaccCGUgaGGGGGaGCCCGGGAa -3'
miRNA:   3'- -CUC-CGGua--GUAggUCCUC-CGGGCCCU- -5'
28777 3' -61.4 NC_006146.1 + 1193 0.66 0.6977
Target:  5'- uGAGcGCCcaccCGUgaGGGGGaGCCCGGGAa -3'
miRNA:   3'- -CUC-CGGua--GUAggUCCUC-CGGGCCCU- -5'
28777 3' -61.4 NC_006146.1 + 117127 0.66 0.687979
Target:  5'- cGAGGCCcUCGUCCGGcGAGaccuccGCCCGc-- -3'
miRNA:   3'- -CUCCGGuAGUAGGUC-CUC------CGGGCccu -5'
28777 3' -61.4 NC_006146.1 + 115394 0.66 0.687979
Target:  5'- -uGGCCGcucgCGUgCAGGAGGCagcuggcggCCGGGc -3'
miRNA:   3'- cuCCGGUa---GUAgGUCCUCCG---------GGCCCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.