miRNA display CGI


Results 1 - 20 of 153 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28777 3' -61.4 NC_006146.1 + 167642 0.77 0.175669
Target:  5'- cGGGGCCcggcgCGUgCCGGG-GGCCCGGGGg -3'
miRNA:   3'- -CUCCGGua---GUA-GGUCCuCCGGGCCCU- -5'
28777 3' -61.4 NC_006146.1 + 167245 0.71 0.397018
Target:  5'- -cGGCCAgUCccuggauGUCgGGGAgGGCCCGGGGc -3'
miRNA:   3'- cuCCGGU-AG-------UAGgUCCU-CCGGGCCCU- -5'
28777 3' -61.4 NC_006146.1 + 169109 0.71 0.397018
Target:  5'- -cGGCCAgUCccuggauGUCgGGGAgGGCCCGGGGc -3'
miRNA:   3'- cuCCGGU-AG-------UAGgUCCU-CCGGGCCCU- -5'
28777 3' -61.4 NC_006146.1 + 48581 0.66 0.707371
Target:  5'- cGGGGCC-UCGggggUCAgGGAGGCCagaaGGGu -3'
miRNA:   3'- -CUCCGGuAGUa---GGU-CCUCCGGg---CCCu -5'
28777 3' -61.4 NC_006146.1 + 168487 0.73 0.287696
Target:  5'- gGAGGCCAcg--UguGGAGGCCCGcGGAg -3'
miRNA:   3'- -CUCCGGUaguaGguCCUCCGGGC-CCU- -5'
28777 3' -61.4 NC_006146.1 + 169419 0.73 0.287696
Target:  5'- gGAGGCCAcg--UguGGAGGCCCGcGGAg -3'
miRNA:   3'- -CUCCGGUaguaGguCCUCCGGGC-CCU- -5'
28777 3' -61.4 NC_006146.1 + 167593 0.73 0.287696
Target:  5'- gGAGGCCGggCcUCCccuGGGGGCCuCGGGGg -3'
miRNA:   3'- -CUCCGGUa-GuAGGu--CCUCCGG-GCCCU- -5'
28777 3' -61.4 NC_006146.1 + 168525 0.73 0.287696
Target:  5'- gGAGGCCGggCcUCCccuGGGGGCCuCGGGGg -3'
miRNA:   3'- -CUCCGGUa-GuAGGu--CCUCCGG-GCCCU- -5'
28777 3' -61.4 NC_006146.1 + 93695 0.72 0.335883
Target:  5'- gGAGGCaua-GUCCAGGAGGCCgUGGaGAc -3'
miRNA:   3'- -CUCCGguagUAGGUCCUCCGG-GCC-CU- -5'
28777 3' -61.4 NC_006146.1 + 55244 0.71 0.389701
Target:  5'- cAGGUaCGUCGcCCGGGcGGCCCGGGc -3'
miRNA:   3'- cUCCG-GUAGUaGGUCCuCCGGGCCCu -5'
28777 3' -61.4 NC_006146.1 + 169506 0.72 0.343229
Target:  5'- cGGGGCCcggcgCGUgCCGGGGGaCCCGGGGg -3'
miRNA:   3'- -CUCCGGua---GUA-GGUCCUCcGGGCCCU- -5'
28777 3' -61.4 NC_006146.1 + 170388 0.73 0.287696
Target:  5'- gGAGGCCGggCcUCCccuGGGGGCCuCGGGGg -3'
miRNA:   3'- -CUCCGGUa-GuAGGu--CCUCCGG-GCCCU- -5'
28777 3' -61.4 NC_006146.1 + 94790 0.76 0.188901
Target:  5'- cGGGCCA-CGUCCacguAGGccAGGCCCGGGGg -3'
miRNA:   3'- cUCCGGUaGUAGG----UCC--UCCGGGCCCU- -5'
28777 3' -61.4 NC_006146.1 + 170437 0.72 0.343229
Target:  5'- cGGGGCCcggcgCGUgCCGGGGGaCCCGGGGg -3'
miRNA:   3'- -CUCCGGua---GUA-GGUCCUCcGGGCCCU- -5'
28777 3' -61.4 NC_006146.1 + 114224 0.75 0.218008
Target:  5'- aGGGCCAgcc-CCAGGGGGCCCGGc- -3'
miRNA:   3'- cUCCGGUaguaGGUCCUCCGGGCCcu -5'
28777 3' -61.4 NC_006146.1 + 169457 0.73 0.287696
Target:  5'- gGAGGCCGggCcUCCccuGGGGGCCuCGGGGg -3'
miRNA:   3'- -CUCCGGUa-GuAGGu--CCUCCGG-GCCCU- -5'
28777 3' -61.4 NC_006146.1 + 96441 0.71 0.381675
Target:  5'- aAGGCCAUCGUgggCCAuGGGGGCa-GGGAc -3'
miRNA:   3'- cUCCGGUAGUA---GGU-CCUCCGggCCCU- -5'
28777 3' -61.4 NC_006146.1 + 168177 0.71 0.397018
Target:  5'- -cGGCCAgUCccuggauGUCgGGGAgGGCCCGGGGc -3'
miRNA:   3'- cuCCGGU-AG-------UAGgUCCU-CCGGGCCCU- -5'
28777 3' -61.4 NC_006146.1 + 167555 0.73 0.287696
Target:  5'- gGAGGCCAcg--UguGGAGGCCCGcGGAg -3'
miRNA:   3'- -CUCCGGUaguaGguCCUCCGGGC-CCU- -5'
28777 3' -61.4 NC_006146.1 + 170350 0.73 0.287696
Target:  5'- gGAGGCCAcg--UguGGAGGCCCGcGGAg -3'
miRNA:   3'- -CUCCGGUaguaGguCCUCCGGGC-CCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.