miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28777 5' -55.6 NC_006146.1 + 11404 0.67 0.877209
Target:  5'- aGCUGCuGGAaaagcagagcCUGCAGGACCa-- -3'
miRNA:   3'- -CGACGuCCUgcaa------GACGUCCUGGagc -5'
28777 5' -55.6 NC_006146.1 + 18859 0.71 0.694561
Target:  5'- cGCUGCcgGGGugGUggacgUGCgGGGGCCUCa -3'
miRNA:   3'- -CGACG--UCCugCAag---ACG-UCCUGGAGc -5'
28777 5' -55.6 NC_006146.1 + 20722 0.68 0.850193
Target:  5'- aGCUGCuGG-CGgcCUGCgAGGACC-CGc -3'
miRNA:   3'- -CGACGuCCuGCaaGACG-UCCUGGaGC- -5'
28777 5' -55.6 NC_006146.1 + 21693 0.71 0.73415
Target:  5'- uGCUGCAGGggGCGgccaacaucCUGCAGuGCCUCu -3'
miRNA:   3'- -CGACGUCC--UGCaa-------GACGUCcUGGAGc -5'
28777 5' -55.6 NC_006146.1 + 36197 0.7 0.772337
Target:  5'- cCUGCAGGACGUUgUGUuguaacAGGAauaCUCc -3'
miRNA:   3'- cGACGUCCUGCAAgACG------UCCUg--GAGc -5'
28777 5' -55.6 NC_006146.1 + 38132 0.66 0.938986
Target:  5'- cCUGCAGcGACcg--UGCGGGACCgCGg -3'
miRNA:   3'- cGACGUC-CUGcaagACGUCCUGGaGC- -5'
28777 5' -55.6 NC_006146.1 + 41466 0.67 0.900159
Target:  5'- gGCggugGCAGcGGCGgugaugUUGCuGGGCCUUGg -3'
miRNA:   3'- -CGa---CGUC-CUGCaa----GACGuCCUGGAGC- -5'
28777 5' -55.6 NC_006146.1 + 45936 0.68 0.850193
Target:  5'- --aGguGGACGgggucucUCUG-GGGACCUCGa -3'
miRNA:   3'- cgaCguCCUGCa------AGACgUCCUGGAGC- -5'
28777 5' -55.6 NC_006146.1 + 46061 0.69 0.79971
Target:  5'- --cGCAGcGA-GUgccauagcugCUGCAGGGCCUCGg -3'
miRNA:   3'- cgaCGUC-CUgCAa---------GACGUCCUGGAGC- -5'
28777 5' -55.6 NC_006146.1 + 47285 0.67 0.889681
Target:  5'- cCUGCAGaACGUcCUGCAgccgggacuccucccGGGCCUCc -3'
miRNA:   3'- cGACGUCcUGCAaGACGU---------------CCUGGAGc -5'
28777 5' -55.6 NC_006146.1 + 49019 0.73 0.603286
Target:  5'- aGCcGCAGGGCGUUCUcCGGGGCg-CGg -3'
miRNA:   3'- -CGaCGUCCUGCAAGAcGUCCUGgaGC- -5'
28777 5' -55.6 NC_006146.1 + 52461 0.67 0.886971
Target:  5'- cGUUGUAGc-CGccgUGCAGGACCUCGg -3'
miRNA:   3'- -CGACGUCcuGCaagACGUCCUGGAGC- -5'
28777 5' -55.6 NC_006146.1 + 53765 0.66 0.918212
Target:  5'- gGCgGCGGG-CGgaggUCUcGCcggacgAGGGCCUCGg -3'
miRNA:   3'- -CGaCGUCCuGCa---AGA-CG------UCCUGGAGC- -5'
28777 5' -55.6 NC_006146.1 + 55313 0.67 0.900159
Target:  5'- -gUGCAGGGCGaagcCUGaCAGGcUCUCGa -3'
miRNA:   3'- cgACGUCCUGCaa--GAC-GUCCuGGAGC- -5'
28777 5' -55.6 NC_006146.1 + 59069 0.67 0.893678
Target:  5'- --cGCAGGGCGacgagcUCuUGCuGGGCCUCc -3'
miRNA:   3'- cgaCGUCCUGCa-----AG-ACGuCCUGGAGc -5'
28777 5' -55.6 NC_006146.1 + 71808 0.73 0.593149
Target:  5'- gGC-GCGGGACGUgcggaccuggCUGCGGGcCCUCc -3'
miRNA:   3'- -CGaCGUCCUGCAa---------GACGUCCuGGAGc -5'
28777 5' -55.6 NC_006146.1 + 75211 0.66 0.918212
Target:  5'- --cGUAGG-CGUacuugccCUGCAGGAUCUCa -3'
miRNA:   3'- cgaCGUCCuGCAa------GACGUCCUGGAGc -5'
28777 5' -55.6 NC_006146.1 + 95074 0.7 0.772337
Target:  5'- aGCUGCcccuGGugcAUGUcCcGCAGGGCCUCGa -3'
miRNA:   3'- -CGACGu---CC---UGCAaGaCGUCCUGGAGC- -5'
28777 5' -55.6 NC_006146.1 + 96810 0.66 0.93113
Target:  5'- aGCUGCaggcuucccuggugGGGACGggCggGCAGGuugggcccgcuucaGCCUCu -3'
miRNA:   3'- -CGACG--------------UCCUGCaaGa-CGUCC--------------UGGAGc -5'
28777 5' -55.6 NC_006146.1 + 100712 0.66 0.918212
Target:  5'- cGCUGCGGGG-GUgggUGUGGGACCg-- -3'
miRNA:   3'- -CGACGUCCUgCAag-ACGUCCUGGagc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.