miRNA display CGI


Results 1 - 20 of 38 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28777 5' -55.6 NC_006146.1 + 36197 0.7 0.772337
Target:  5'- cCUGCAGGACGUUgUGUuguaacAGGAauaCUCc -3'
miRNA:   3'- cGACGUCCUGCAAgACG------UCCUg--GAGc -5'
28777 5' -55.6 NC_006146.1 + 59069 0.67 0.893678
Target:  5'- --cGCAGGGCGacgagcUCuUGCuGGGCCUCc -3'
miRNA:   3'- cgaCGUCCUGCa-----AG-ACGuCCUGGAGc -5'
28777 5' -55.6 NC_006146.1 + 150151 0.67 0.912428
Target:  5'- uGCUGCuuguccAGGAUGgUCUuuuggcGCGGGuCCUCGc -3'
miRNA:   3'- -CGACG------UCCUGCaAGA------CGUCCuGGAGC- -5'
28777 5' -55.6 NC_006146.1 + 96810 0.66 0.93113
Target:  5'- aGCUGCaggcuucccuggugGGGACGggCggGCAGGuugggcccgcuucaGCCUCu -3'
miRNA:   3'- -CGACG--------------UCCUGCaaGa-CGUCC--------------UGGAGc -5'
28777 5' -55.6 NC_006146.1 + 130814 0.78 0.346894
Target:  5'- aGCUGCAGcACGcgCUGCAGGcCCUCc -3'
miRNA:   3'- -CGACGUCcUGCaaGACGUCCuGGAGc -5'
28777 5' -55.6 NC_006146.1 + 49019 0.73 0.603286
Target:  5'- aGCcGCAGGGCGUUCUcCGGGGCg-CGg -3'
miRNA:   3'- -CGaCGUCCUGCAAGAcGUCCUGgaGC- -5'
28777 5' -55.6 NC_006146.1 + 155235 0.72 0.643975
Target:  5'- gGCUGUGGGucaGggCgUGCAGGugCUCGg -3'
miRNA:   3'- -CGACGUCCug-CaaG-ACGUCCugGAGC- -5'
28777 5' -55.6 NC_006146.1 + 147566 0.72 0.664295
Target:  5'- cGCUG-AGGuCGgUCUGCAGGGCCa-- -3'
miRNA:   3'- -CGACgUCCuGCaAGACGUCCUGGagc -5'
28777 5' -55.6 NC_006146.1 + 149825 0.7 0.753455
Target:  5'- gGCUcCGGGugGUgugggCgGcCAGGGCCUCGg -3'
miRNA:   3'- -CGAcGUCCugCAa----GaC-GUCCUGGAGC- -5'
28777 5' -55.6 NC_006146.1 + 47285 0.67 0.889681
Target:  5'- cCUGCAGaACGUcCUGCAgccgggacuccucccGGGCCUCc -3'
miRNA:   3'- cGACGUCcUGCAaGACGU---------------CCUGGAGc -5'
28777 5' -55.6 NC_006146.1 + 168246 0.68 0.865533
Target:  5'- cCUGCAGGGgGggCcgGCGGGGCgUCc -3'
miRNA:   3'- cGACGUCCUgCaaGa-CGUCCUGgAGc -5'
28777 5' -55.6 NC_006146.1 + 167314 0.68 0.865533
Target:  5'- cCUGCAGGGgGggCcgGCGGGGCgUCc -3'
miRNA:   3'- cGACGUCCUgCaaGa-CGUCCUGgAGc -5'
28777 5' -55.6 NC_006146.1 + 95074 0.7 0.772337
Target:  5'- aGCUGCcccuGGugcAUGUcCcGCAGGGCCUCGa -3'
miRNA:   3'- -CGACGu---CC---UGCAaGaCGUCCUGGAGC- -5'
28777 5' -55.6 NC_006146.1 + 169178 0.68 0.865533
Target:  5'- cCUGCAGGGgGggCcgGCGGGGCgUCc -3'
miRNA:   3'- cGACGUCCUgCaaGa-CGUCCUGgAGc -5'
28777 5' -55.6 NC_006146.1 + 46061 0.69 0.79971
Target:  5'- --cGCAGcGA-GUgccauagcugCUGCAGGGCCUCGg -3'
miRNA:   3'- cgaCGUC-CUgCAa---------GACGUCCUGGAGC- -5'
28777 5' -55.6 NC_006146.1 + 114352 0.68 0.861016
Target:  5'- cCUGgAGuaGACGUuaaacaggagaaucuUCUGUAGGACCUCc -3'
miRNA:   3'- cGACgUC--CUGCA---------------AGACGUCCUGGAGc -5'
28777 5' -55.6 NC_006146.1 + 52461 0.67 0.886971
Target:  5'- cGUUGUAGc-CGccgUGCAGGACCUCGg -3'
miRNA:   3'- -CGACGUCcuGCaagACGUCCUGGAGC- -5'
28777 5' -55.6 NC_006146.1 + 55313 0.67 0.900159
Target:  5'- -gUGCAGGGCGaagcCUGaCAGGcUCUCGa -3'
miRNA:   3'- cgACGUCCUGCaa--GAC-GUCCuGGAGC- -5'
28777 5' -55.6 NC_006146.1 + 112114 0.68 0.842227
Target:  5'- gGgUGgAGGugGUgCUGguGGugGCCUCGg -3'
miRNA:   3'- -CgACgUCCugCAaGACguCC--UGGAGC- -5'
28777 5' -55.6 NC_006146.1 + 45936 0.68 0.850193
Target:  5'- --aGguGGACGgggucucUCUG-GGGACCUCGa -3'
miRNA:   3'- cgaCguCCUGCa------AGACgUCCUGGAGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.