miRNA display CGI


Results 41 - 60 of 125 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28778 5' -63.5 NC_006146.1 + 141526 0.67 0.511613
Target:  5'- cGGGCcuggGAGGCUGGUUCUGGggcuggaCUugGGa -3'
miRNA:   3'- -CUCGa---CUCCGACCGGGACC-------GGugCCa -5'
28778 5' -63.5 NC_006146.1 + 144604 0.67 0.511613
Target:  5'- cGGGCcuggGAGGCUGGUUCUGGggcuggaCUugGGa -3'
miRNA:   3'- -CUCGa---CUCCGACCGGGACC-------GGugCCa -5'
28778 5' -63.5 NC_006146.1 + 150759 0.67 0.511613
Target:  5'- cGGGCcuggGAGGCUGGUUCUGGggcuggaCUugGGa -3'
miRNA:   3'- -CUCGa---CUCCGACCGGGACC-------GGugCCa -5'
28778 5' -63.5 NC_006146.1 + 153837 0.67 0.511613
Target:  5'- cGGGCcuggGAGGCUGGUUCUGGggcuggaCUugGGa -3'
miRNA:   3'- -CUCGa---CUCCGACCGGGACC-------GGugCCa -5'
28778 5' -63.5 NC_006146.1 + 156915 0.67 0.511613
Target:  5'- cGGGCcuggGAGGCUGGUUCUGGggcuggaCUugGGa -3'
miRNA:   3'- -CUCGa---CUCCGACCGGGACC-------GGugCCa -5'
28778 5' -63.5 NC_006146.1 + 124749 0.67 0.50881
Target:  5'- cGAGUuccUGGGGCUGGUCCacaaucagagcacGGCCAgGGc -3'
miRNA:   3'- -CUCG---ACUCCGACCGGGa------------CCGGUgCCa -5'
28778 5' -63.5 NC_006146.1 + 128882 0.67 0.503225
Target:  5'- gGGGCgGAGGCgGGCCCgaa-CGCGGg -3'
miRNA:   3'- -CUCGaCUCCGaCCGGGaccgGUGCCa -5'
28778 5' -63.5 NC_006146.1 + 155502 0.67 0.503225
Target:  5'- gGGGaCUGAGGCgGGCCUgaaGCC-CGGg -3'
miRNA:   3'- -CUC-GACUCCGaCCGGGac-CGGuGCCa -5'
28778 5' -63.5 NC_006146.1 + 36904 0.67 0.503225
Target:  5'- gGGGUUGAGGCcuGCCUUGGUuaugCAUGGUg -3'
miRNA:   3'- -CUCGACUCCGacCGGGACCG----GUGCCA- -5'
28778 5' -63.5 NC_006146.1 + 158581 0.67 0.503225
Target:  5'- gGGGaCUGAGGCgGGCCUgaaGCC-CGGg -3'
miRNA:   3'- -CUC-GACUCCGaCCGGGac-CGGuGCCa -5'
28778 5' -63.5 NC_006146.1 + 152424 0.67 0.503225
Target:  5'- gGGGaCUGAGGCgGGCCUgaaGCC-CGGg -3'
miRNA:   3'- -CUC-GACUCCGaCCGGGac-CGGuGCCa -5'
28778 5' -63.5 NC_006146.1 + 149346 0.67 0.503225
Target:  5'- gGGGaCUGAGGCgGGCCUgaaGCC-CGGg -3'
miRNA:   3'- -CUC-GACUCCGaCCGGGac-CGGuGCCa -5'
28778 5' -63.5 NC_006146.1 + 146268 0.67 0.503225
Target:  5'- gGGGaCUGAGGCgGGCCUgaaGCC-CGGg -3'
miRNA:   3'- -CUC-GACUCCGaCCGGGac-CGGuGCCa -5'
28778 5' -63.5 NC_006146.1 + 143190 0.67 0.503225
Target:  5'- gGGGaCUGAGGCgGGCCUgaaGCC-CGGg -3'
miRNA:   3'- -CUC-GACUCCGaCCGGGac-CGGuGCCa -5'
28778 5' -63.5 NC_006146.1 + 39884 0.67 0.503225
Target:  5'- aGGCUGAGGCUGaGC---GGCCuGCGGg -3'
miRNA:   3'- cUCGACUCCGAC-CGggaCCGG-UGCCa -5'
28778 5' -63.5 NC_006146.1 + 39764 0.67 0.503225
Target:  5'- aGGCUGGGGCUuggagucaGGCUUgGGCC-CGGa -3'
miRNA:   3'- cUCGACUCCGA--------CCGGGaCCGGuGCCa -5'
28778 5' -63.5 NC_006146.1 + 153613 0.67 0.493975
Target:  5'- cGGCUGggggucGGGCUGGCCU--GCCAgGGg -3'
miRNA:   3'- cUCGAC------UCCGACCGGGacCGGUgCCa -5'
28778 5' -63.5 NC_006146.1 + 161757 0.67 0.493975
Target:  5'- cGGCUGAGGUccgagggGGCgCCUGGgCGgGGg -3'
miRNA:   3'- cUCGACUCCGa------CCG-GGACCgGUgCCa -5'
28778 5' -63.5 NC_006146.1 + 144379 0.67 0.493975
Target:  5'- cGGCUGggggucGGGCUGGCCU--GCCAgGGg -3'
miRNA:   3'- cUCGAC------UCCGACCGGGacCGGUgCCa -5'
28778 5' -63.5 NC_006146.1 + 141301 0.67 0.493975
Target:  5'- cGGCUGggggucGGGCUGGCCU--GCCAgGGg -3'
miRNA:   3'- cUCGAC------UCCGACCGGGacCGGUgCCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.