miRNA display CGI


Results 21 - 40 of 125 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28778 5' -63.5 NC_006146.1 + 146538 0.66 0.540925
Target:  5'- --cCUGGaGCUGGCCCUGcGCCACu-- -3'
miRNA:   3'- cucGACUcCGACCGGGAC-CGGUGcca -5'
28778 5' -63.5 NC_006146.1 + 143235 0.66 0.538063
Target:  5'- uGAGCucUGggugccaagaaaccAGGCUGGCCCggugacgcUGGCC-CGGa -3'
miRNA:   3'- -CUCG--AC--------------UCCGACCGGG--------ACCGGuGCCa -5'
28778 5' -63.5 NC_006146.1 + 158261 0.66 0.538063
Target:  5'- uAGUuaUGGGGcCUGGCcgggucuaagguggCCUGGCCugGGc -3'
miRNA:   3'- cUCG--ACUCC-GACCG--------------GGACCGGugCCa -5'
28778 5' -63.5 NC_006146.1 + 155182 0.66 0.538063
Target:  5'- uAGUuaUGGGGcCUGGCcgggucuaagguggCCUGGCCugGGc -3'
miRNA:   3'- cUCG--ACUCC-GACCG--------------GGACCGGugCCa -5'
28778 5' -63.5 NC_006146.1 + 152104 0.66 0.538063
Target:  5'- uAGUuaUGGGGcCUGGCcgggucuaagguggCCUGGCCugGGc -3'
miRNA:   3'- cUCG--ACUCC-GACCG--------------GGACCGGugCCa -5'
28778 5' -63.5 NC_006146.1 + 149026 0.66 0.538063
Target:  5'- uAGUuaUGGGGcCUGGCcgggucuaagguggCCUGGCCugGGc -3'
miRNA:   3'- cUCG--ACUCC-GACCG--------------GGACCGGugCCa -5'
28778 5' -63.5 NC_006146.1 + 145948 0.66 0.538063
Target:  5'- uAGUuaUGGGGcCUGGCcgggucuaagguggCCUGGCCugGGc -3'
miRNA:   3'- cUCG--ACUCC-GACCG--------------GGACCGGugCCa -5'
28778 5' -63.5 NC_006146.1 + 142870 0.66 0.538063
Target:  5'- uAGUuaUGGGGcCUGGCcgggucuaagguggCCUGGCCugGGc -3'
miRNA:   3'- cUCG--ACUCC-GACCG--------------GGACCGGugCCa -5'
28778 5' -63.5 NC_006146.1 + 88256 0.66 0.538063
Target:  5'- cGGGCUGuGGUUGuaaaggauggguauGUgCUGGCCugGGa -3'
miRNA:   3'- -CUCGACuCCGAC--------------CGgGACCGGugCCa -5'
28778 5' -63.5 NC_006146.1 + 165810 0.66 0.531404
Target:  5'- cGGCUaggGGGGCgu-CCCUGGCCGCGuGg -3'
miRNA:   3'- cUCGA---CUCCGaccGGGACCGGUGC-Ca -5'
28778 5' -63.5 NC_006146.1 + 124149 0.66 0.531404
Target:  5'- gGGGUcggGAGGCgaGGaCCCUGGCCAgcgUGGc -3'
miRNA:   3'- -CUCGa--CUCCGa-CC-GGGACCGGU---GCCa -5'
28778 5' -63.5 NC_006146.1 + 107603 0.66 0.531404
Target:  5'- -uGCaGAGGgUGGCCaUGGCgcaCACGGUg -3'
miRNA:   3'- cuCGaCUCCgACCGGgACCG---GUGCCA- -5'
28778 5' -63.5 NC_006146.1 + 6407 0.66 0.531404
Target:  5'- uGGGCcaUGGGGUcccuuUGGCCCagGGCCAUGuGg -3'
miRNA:   3'- -CUCG--ACUCCG-----ACCGGGa-CCGGUGC-Ca -5'
28778 5' -63.5 NC_006146.1 + 20211 0.66 0.531404
Target:  5'- aGGCUGGGcauguacugcguGCaggauucGGCCCUGGUCAUGGa -3'
miRNA:   3'- cUCGACUC------------CGa------CCGGGACCGGUGCCa -5'
28778 5' -63.5 NC_006146.1 + 43716 0.67 0.521943
Target:  5'- cGAGCgUGAGGCUauaacgcauGUCCUGGUCGgGGg -3'
miRNA:   3'- -CUCG-ACUCCGAc--------CGGGACCGGUgCCa -5'
28778 5' -63.5 NC_006146.1 + 123031 0.67 0.521943
Target:  5'- aGGCcGAGGC-GGCCCaGGUC-CGGg -3'
miRNA:   3'- cUCGaCUCCGaCCGGGaCCGGuGCCa -5'
28778 5' -63.5 NC_006146.1 + 123376 0.67 0.512549
Target:  5'- uGGCcgGGGGCcccgcaaccUGGCUggaaCUGGCCGCGGc -3'
miRNA:   3'- cUCGa-CUCCG---------ACCGG----GACCGGUGCCa -5'
28778 5' -63.5 NC_006146.1 + 40845 0.67 0.512549
Target:  5'- gGGGCagGGGGCgcucuuggaGGCCC-GGCuCGCGGUc -3'
miRNA:   3'- -CUCGa-CUCCGa--------CCGGGaCCG-GUGCCA- -5'
28778 5' -63.5 NC_006146.1 + 67326 0.67 0.512549
Target:  5'- -cGCUGAGcCcGGCCCaGGCC-CGGg -3'
miRNA:   3'- cuCGACUCcGaCCGGGaCCGGuGCCa -5'
28778 5' -63.5 NC_006146.1 + 155864 0.67 0.512549
Target:  5'- aGGCcc-GGCgGGCCCUGGCCA-GGc -3'
miRNA:   3'- cUCGacuCCGaCCGGGACCGGUgCCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.