Results 21 - 40 of 125 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28778 | 5' | -63.5 | NC_006146.1 | + | 158261 | 0.66 | 0.538063 |
Target: 5'- uAGUuaUGGGGcCUGGCcgggucuaagguggCCUGGCCugGGc -3' miRNA: 3'- cUCG--ACUCC-GACCG--------------GGACCGGugCCa -5' |
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28778 | 5' | -63.5 | NC_006146.1 | + | 129049 | 0.66 | 0.550504 |
Target: 5'- ----cGAGGCcccGGuagcCCCUGGCCACGGc -3' miRNA: 3'- cucgaCUCCGa--CC----GGGACCGGUGCCa -5' |
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28778 | 5' | -63.5 | NC_006146.1 | + | 15417 | 0.66 | 0.560133 |
Target: 5'- uGGCcucagaGGGGCUGGCCC-GGCUGCaGUc -3' miRNA: 3'- cUCGa-----CUCCGACCGGGaCCGGUGcCA- -5' |
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28778 | 5' | -63.5 | NC_006146.1 | + | 88595 | 0.66 | 0.560133 |
Target: 5'- gGGGCUGGGGCU-GUUgUGGCUGCGa- -3' miRNA: 3'- -CUCGACUCCGAcCGGgACCGGUGCca -5' |
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28778 | 5' | -63.5 | NC_006146.1 | + | 103090 | 0.66 | 0.560133 |
Target: 5'- gGAGCUguuuacuuccGAGGCggGGCagagCCUGGCCGCcGUc -3' miRNA: 3'- -CUCGA----------CUCCGa-CCG----GGACCGGUGcCA- -5' |
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28778 | 5' | -63.5 | NC_006146.1 | + | 32979 | 0.66 | 0.563999 |
Target: 5'- -cGCUGGgucgcGGCUgcccccggaacccccGGCCCUGuCCACGGg -3' miRNA: 3'- cuCGACU-----CCGA---------------CCGGGACcGGUGCCa -5' |
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28778 | 5' | -63.5 | NC_006146.1 | + | 132075 | 0.66 | 0.569809 |
Target: 5'- uGAGCUGccccAGGCUcaGGgCCUGGCUGCa-- -3' miRNA: 3'- -CUCGAC----UCCGA--CCgGGACCGGUGcca -5' |
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28778 | 5' | -63.5 | NC_006146.1 | + | 155182 | 0.66 | 0.538063 |
Target: 5'- uAGUuaUGGGGcCUGGCcgggucuaagguggCCUGGCCugGGc -3' miRNA: 3'- cUCG--ACUCC-GACCG--------------GGACCGGugCCa -5' |
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28778 | 5' | -63.5 | NC_006146.1 | + | 152104 | 0.66 | 0.538063 |
Target: 5'- uAGUuaUGGGGcCUGGCcgggucuaagguggCCUGGCCugGGc -3' miRNA: 3'- cUCG--ACUCC-GACCG--------------GGACCGGugCCa -5' |
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28778 | 5' | -63.5 | NC_006146.1 | + | 149026 | 0.66 | 0.538063 |
Target: 5'- uAGUuaUGGGGcCUGGCcgggucuaagguggCCUGGCCugGGc -3' miRNA: 3'- cUCG--ACUCC-GACCG--------------GGACCGGugCCa -5' |
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28778 | 5' | -63.5 | NC_006146.1 | + | 145948 | 0.66 | 0.538063 |
Target: 5'- uAGUuaUGGGGcCUGGCcgggucuaagguggCCUGGCCugGGc -3' miRNA: 3'- cUCG--ACUCC-GACCG--------------GGACCGGugCCa -5' |
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28778 | 5' | -63.5 | NC_006146.1 | + | 142870 | 0.66 | 0.538063 |
Target: 5'- uAGUuaUGGGGcCUGGCcgggucuaagguggCCUGGCCugGGc -3' miRNA: 3'- cUCG--ACUCC-GACCG--------------GGACCGGugCCa -5' |
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28778 | 5' | -63.5 | NC_006146.1 | + | 165810 | 0.66 | 0.531404 |
Target: 5'- cGGCUaggGGGGCgu-CCCUGGCCGCGuGg -3' miRNA: 3'- cUCGA---CUCCGaccGGGACCGGUGC-Ca -5' |
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28778 | 5' | -63.5 | NC_006146.1 | + | 129270 | 0.66 | 0.550504 |
Target: 5'- aGGGaugUGGGGCUGGUCUgcgcccgGGCCcaGCGGa -3' miRNA: 3'- -CUCg--ACUCCGACCGGGa------CCGG--UGCCa -5' |
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28778 | 5' | -63.5 | NC_006146.1 | + | 158581 | 0.67 | 0.503225 |
Target: 5'- gGGGaCUGAGGCgGGCCUgaaGCC-CGGg -3' miRNA: 3'- -CUC-GACUCCGaCCGGGac-CGGuGCCa -5' |
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28778 | 5' | -63.5 | NC_006146.1 | + | 124749 | 0.67 | 0.50881 |
Target: 5'- cGAGUuccUGGGGCUGGUCCacaaucagagcacGGCCAgGGc -3' miRNA: 3'- -CUCG---ACUCCGACCGGGa------------CCGGUgCCa -5' |
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28778 | 5' | -63.5 | NC_006146.1 | + | 141526 | 0.67 | 0.511613 |
Target: 5'- cGGGCcuggGAGGCUGGUUCUGGggcuggaCUugGGa -3' miRNA: 3'- -CUCGa---CUCCGACCGGGACC-------GGugCCa -5' |
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28778 | 5' | -63.5 | NC_006146.1 | + | 144604 | 0.67 | 0.511613 |
Target: 5'- cGGGCcuggGAGGCUGGUUCUGGggcuggaCUugGGa -3' miRNA: 3'- -CUCGa---CUCCGACCGGGACC-------GGugCCa -5' |
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28778 | 5' | -63.5 | NC_006146.1 | + | 150759 | 0.67 | 0.511613 |
Target: 5'- cGGGCcuggGAGGCUGGUUCUGGggcuggaCUugGGa -3' miRNA: 3'- -CUCGa---CUCCGACCGGGACC-------GGugCCa -5' |
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28778 | 5' | -63.5 | NC_006146.1 | + | 153837 | 0.67 | 0.511613 |
Target: 5'- cGGGCcuggGAGGCUGGUUCUGGggcuggaCUugGGa -3' miRNA: 3'- -CUCGa---CUCCGACCGGGACC-------GGugCCa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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