miRNA display CGI


Results 1 - 20 of 125 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28778 5' -63.5 NC_006146.1 + 168312 0.65 0.5883
Target:  5'- gGGGCUGAgggggcucccgagGGCggGGCCggGGCCugGCGGg -3'
miRNA:   3'- -CUCGACU-------------CCGa-CCGGgaCCGG--UGCCa -5'
28778 5' -63.5 NC_006146.1 + 167380 0.65 0.5883
Target:  5'- gGGGCUGAgggggcucccgagGGCggGGCCggGGCCugGCGGg -3'
miRNA:   3'- -CUCGACU-------------CCGa-CCGGgaCCGG--UGCCa -5'
28778 5' -63.5 NC_006146.1 + 170175 0.65 0.5883
Target:  5'- gGGGCUGAgggggcucccgagGGCggGGCCggGGCCugGCGGg -3'
miRNA:   3'- -CUCGACU-------------CCGa-CCGGgaCCGG--UGCCa -5'
28778 5' -63.5 NC_006146.1 + 169244 0.65 0.5883
Target:  5'- gGGGCUGAgggggcucccgagGGCggGGCCggGGCCugGCGGg -3'
miRNA:   3'- -CUCGACU-------------CCGa-CCGGgaCCGG--UGCCa -5'
28778 5' -63.5 NC_006146.1 + 15417 0.66 0.560133
Target:  5'- uGGCcucagaGGGGCUGGCCC-GGCUGCaGUc -3'
miRNA:   3'- cUCGa-----CUCCGACCGGGaCCGGUGcCA- -5'
28778 5' -63.5 NC_006146.1 + 6407 0.66 0.531404
Target:  5'- uGGGCcaUGGGGUcccuuUGGCCCagGGCCAUGuGg -3'
miRNA:   3'- -CUCG--ACUCCG-----ACCGGGa-CCGGUGC-Ca -5'
28778 5' -63.5 NC_006146.1 + 20211 0.66 0.531404
Target:  5'- aGGCUGGGcauguacugcguGCaggauucGGCCCUGGUCAUGGa -3'
miRNA:   3'- cUCGACUC------------CGa------CCGGGACCGGUGCCa -5'
28778 5' -63.5 NC_006146.1 + 107603 0.66 0.531404
Target:  5'- -uGCaGAGGgUGGCCaUGGCgcaCACGGUg -3'
miRNA:   3'- cuCGaCUCCgACCGGgACCG---GUGCCA- -5'
28778 5' -63.5 NC_006146.1 + 124149 0.66 0.531404
Target:  5'- gGGGUcggGAGGCgaGGaCCCUGGCCAgcgUGGc -3'
miRNA:   3'- -CUCGa--CUCCGa-CC-GGGACCGGU---GCCa -5'
28778 5' -63.5 NC_006146.1 + 165810 0.66 0.531404
Target:  5'- cGGCUaggGGGGCgu-CCCUGGCCGCGuGg -3'
miRNA:   3'- cUCGA---CUCCGaccGGGACCGGUGC-Ca -5'
28778 5' -63.5 NC_006146.1 + 142870 0.66 0.538063
Target:  5'- uAGUuaUGGGGcCUGGCcgggucuaagguggCCUGGCCugGGc -3'
miRNA:   3'- cUCG--ACUCC-GACCG--------------GGACCGGugCCa -5'
28778 5' -63.5 NC_006146.1 + 145948 0.66 0.538063
Target:  5'- uAGUuaUGGGGcCUGGCcgggucuaagguggCCUGGCCugGGc -3'
miRNA:   3'- cUCG--ACUCC-GACCG--------------GGACCGGugCCa -5'
28778 5' -63.5 NC_006146.1 + 149026 0.66 0.538063
Target:  5'- uAGUuaUGGGGcCUGGCcgggucuaagguggCCUGGCCugGGc -3'
miRNA:   3'- cUCG--ACUCC-GACCG--------------GGACCGGugCCa -5'
28778 5' -63.5 NC_006146.1 + 152104 0.66 0.538063
Target:  5'- uAGUuaUGGGGcCUGGCcgggucuaagguggCCUGGCCugGGc -3'
miRNA:   3'- cUCG--ACUCC-GACCG--------------GGACCGGugCCa -5'
28778 5' -63.5 NC_006146.1 + 32979 0.66 0.563999
Target:  5'- -cGCUGGgucgcGGCUgcccccggaacccccGGCCCUGuCCACGGg -3'
miRNA:   3'- cuCGACU-----CCGA---------------CCGGGACcGGUGCCa -5'
28778 5' -63.5 NC_006146.1 + 158261 0.66 0.538063
Target:  5'- uAGUuaUGGGGcCUGGCcgggucuaagguggCCUGGCCugGGc -3'
miRNA:   3'- cUCG--ACUCC-GACCG--------------GGACCGGugCCa -5'
28778 5' -63.5 NC_006146.1 + 88256 0.66 0.538063
Target:  5'- cGGGCUGuGGUUGuaaaggauggguauGUgCUGGCCugGGa -3'
miRNA:   3'- -CUCGACuCCGAC--------------CGgGACCGGugCCa -5'
28778 5' -63.5 NC_006146.1 + 103090 0.66 0.560133
Target:  5'- gGAGCUguuuacuuccGAGGCggGGCagagCCUGGCCGCcGUc -3'
miRNA:   3'- -CUCGA----------CUCCGa-CCG----GGACCGGUGcCA- -5'
28778 5' -63.5 NC_006146.1 + 129270 0.66 0.550504
Target:  5'- aGGGaugUGGGGCUGGUCUgcgcccgGGCCcaGCGGa -3'
miRNA:   3'- -CUCg--ACUCCGACCGGGa------CCGG--UGCCa -5'
28778 5' -63.5 NC_006146.1 + 129049 0.66 0.550504
Target:  5'- ----cGAGGCcccGGuagcCCCUGGCCACGGc -3'
miRNA:   3'- cucgaCUCCGa--CC----GGGACCGGUGCCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.