miRNA display CGI


Results 1 - 20 of 125 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28778 5' -63.5 NC_006146.1 + 95522 0.74 0.194172
Target:  5'- gGAGCUGucGGGUgcGGCgCCUGGCCAgGGUc -3'
miRNA:   3'- -CUCGAC--UCCGa-CCG-GGACCGGUgCCA- -5'
28778 5' -63.5 NC_006146.1 + 169376 0.68 0.431617
Target:  5'- gGGGCaG-GGCUGGCgCCgGGCCGCGc- -3'
miRNA:   3'- -CUCGaCuCCGACCG-GGaCCGGUGCca -5'
28778 5' -63.5 NC_006146.1 + 51847 0.68 0.466712
Target:  5'- gGGGCUcGGGGcCUGGCCC-GaGCC-CGGg -3'
miRNA:   3'- -CUCGA-CUCC-GACCGGGaC-CGGuGCCa -5'
28778 5' -63.5 NC_006146.1 + 170175 0.65 0.5883
Target:  5'- gGGGCUGAgggggcucccgagGGCggGGCCggGGCCugGCGGg -3'
miRNA:   3'- -CUCGACU-------------CCGa-CCGGgaCCGG--UGCCa -5'
28778 5' -63.5 NC_006146.1 + 41605 0.72 0.263287
Target:  5'- aGGCccggGGGGCUGGUCCgcugGGCC-CGGg -3'
miRNA:   3'- cUCGa---CUCCGACCGGGa---CCGGuGCCa -5'
28778 5' -63.5 NC_006146.1 + 56821 0.71 0.294774
Target:  5'- gGGGCUucuggcccccGAGGC-GGCCuCUGGCgGCGGg -3'
miRNA:   3'- -CUCGA----------CUCCGaCCGG-GACCGgUGCCa -5'
28778 5' -63.5 NC_006146.1 + 157509 0.71 0.301413
Target:  5'- uGGCUGAGGCaguccgUGGCCgCgcagaccacggUGGUCGCGGUg -3'
miRNA:   3'- cUCGACUCCG------ACCGG-G-----------ACCGGUGCCA- -5'
28778 5' -63.5 NC_006146.1 + 47240 0.71 0.308166
Target:  5'- uGAGCUGgcgcGGGUcgacgUGGcCCCUGGCC-CGGg -3'
miRNA:   3'- -CUCGAC----UCCG-----ACC-GGGACCGGuGCCa -5'
28778 5' -63.5 NC_006146.1 + 117884 0.69 0.390002
Target:  5'- uGGGCacccGAGGCUGGucaucgaccCCCgcGGCCACGGc -3'
miRNA:   3'- -CUCGa---CUCCGACC---------GGGa-CCGGUGCCa -5'
28778 5' -63.5 NC_006146.1 + 168444 0.68 0.431617
Target:  5'- gGGGCaG-GGCUGGCgCCgGGCCGCGc- -3'
miRNA:   3'- -CUCGaCuCCGACCG-GGaCCGGUGCca -5'
28778 5' -63.5 NC_006146.1 + 109288 0.68 0.414658
Target:  5'- uAGCUGGGagggauCUcGGCCCcGGCCGCGGc -3'
miRNA:   3'- cUCGACUCc-----GA-CCGGGaCCGGUGCCa -5'
28778 5' -63.5 NC_006146.1 + 52990 0.69 0.369425
Target:  5'- cGGGCgucucGAGGCcccucuucUGGCCCugggccucacgcggcUGGCCGCGGc -3'
miRNA:   3'- -CUCGa----CUCCG--------ACCGGG---------------ACCGGUGCCa -5'
28778 5' -63.5 NC_006146.1 + 53326 0.73 0.213561
Target:  5'- cGAGCccGAGGa-GGCCCggcGGCCGCGGg -3'
miRNA:   3'- -CUCGa-CUCCgaCCGGGa--CCGGUGCCa -5'
28778 5' -63.5 NC_006146.1 + 147108 0.68 0.414658
Target:  5'- cGAGCUGGGGCUcagcgGGCCCcagacgcgcaGGCCGCc-- -3'
miRNA:   3'- -CUCGACUCCGA-----CCGGGa---------CCGGUGcca -5'
28778 5' -63.5 NC_006146.1 + 53492 0.73 0.218661
Target:  5'- aGGGCcgGGGGUgcggucUGGCUCUGGCUGCGGg -3'
miRNA:   3'- -CUCGa-CUCCG------ACCGGGACCGGUGCCa -5'
28778 5' -63.5 NC_006146.1 + 128326 0.7 0.358656
Target:  5'- cGGGCUGGuccuGCUGGCCCUGgagaugaaGCCgACGGa -3'
miRNA:   3'- -CUCGACUc---CGACCGGGAC--------CGG-UGCCa -5'
28778 5' -63.5 NC_006146.1 + 167512 0.68 0.431617
Target:  5'- gGGGCaG-GGCUGGCgCCgGGCCGCGc- -3'
miRNA:   3'- -CUCGaCuCCGACCG-GGaCCGGUGCca -5'
28778 5' -63.5 NC_006146.1 + 170307 0.68 0.431617
Target:  5'- gGGGCaG-GGCUGGCgCCgGGCCGCGc- -3'
miRNA:   3'- -CUCGaCuCCGACCG-GGaCCGGUGCca -5'
28778 5' -63.5 NC_006146.1 + 139068 0.72 0.24574
Target:  5'- aGGGCgGAaGCUGGaCUUUGGCCACGGg -3'
miRNA:   3'- -CUCGaCUcCGACC-GGGACCGGUGCCa -5'
28778 5' -63.5 NC_006146.1 + 40733 0.71 0.294774
Target:  5'- cGGGC--AGGCgGGCCCgugcuuggggcUGGCCACGGa -3'
miRNA:   3'- -CUCGacUCCGaCCGGG-----------ACCGGUGCCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.