Results 21 - 40 of 125 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28778 | 5' | -63.5 | NC_006146.1 | + | 61391 | 0.67 | 0.475715 |
Target: 5'- uGAGCUaugGGGGUUGuCCCaggcUGGCUGCGGUg -3' miRNA: 3'- -CUCGA---CUCCGACcGGG----ACCGGUGCCA- -5' |
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28778 | 5' | -63.5 | NC_006146.1 | + | 51847 | 0.68 | 0.466712 |
Target: 5'- gGGGCUcGGGGcCUGGCCC-GaGCC-CGGg -3' miRNA: 3'- -CUCGA-CUCC-GACCGGGaC-CGGuGCCa -5' |
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28778 | 5' | -63.5 | NC_006146.1 | + | 52990 | 0.69 | 0.369425 |
Target: 5'- cGGGCgucucGAGGCcccucuucUGGCCCugggccucacgcggcUGGCCGCGGc -3' miRNA: 3'- -CUCGa----CUCCG--------ACCGGG---------------ACCGGUGCCa -5' |
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28778 | 5' | -63.5 | NC_006146.1 | + | 139068 | 0.72 | 0.24574 |
Target: 5'- aGGGCgGAaGCUGGaCUUUGGCCACGGg -3' miRNA: 3'- -CUCGaCUcCGACC-GGGACCGGUGCCa -5' |
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28778 | 5' | -63.5 | NC_006146.1 | + | 98302 | 0.66 | 0.569809 |
Target: 5'- gGGGCUGAgGGCgugcuccgUGGCCguCUGG-CACGGg -3' miRNA: 3'- -CUCGACU-CCG--------ACCGG--GACCgGUGCCa -5' |
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28778 | 5' | -63.5 | NC_006146.1 | + | 43716 | 0.67 | 0.521943 |
Target: 5'- cGAGCgUGAGGCUauaacgcauGUCCUGGUCGgGGg -3' miRNA: 3'- -CUCG-ACUCCGAc--------CGGGACCGGUgCCa -5' |
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28778 | 5' | -63.5 | NC_006146.1 | + | 169376 | 0.68 | 0.431617 |
Target: 5'- gGGGCaG-GGCUGGCgCCgGGCCGCGc- -3' miRNA: 3'- -CUCGaCuCCGACCG-GGaCCGGUGCca -5' |
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28778 | 5' | -63.5 | NC_006146.1 | + | 53492 | 0.73 | 0.218661 |
Target: 5'- aGGGCcgGGGGUgcggucUGGCUCUGGCUGCGGg -3' miRNA: 3'- -CUCGa-CUCCG------ACCGGGACCGGUGCCa -5' |
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28778 | 5' | -63.5 | NC_006146.1 | + | 155864 | 0.67 | 0.512549 |
Target: 5'- aGGCcc-GGCgGGCCCUGGCCA-GGc -3' miRNA: 3'- cUCGacuCCGaCCGGGACCGGUgCCa -5' |
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28778 | 5' | -63.5 | NC_006146.1 | + | 53326 | 0.73 | 0.213561 |
Target: 5'- cGAGCccGAGGa-GGCCCggcGGCCGCGGg -3' miRNA: 3'- -CUCGa-CUCCgaCCGGGa--CCGGUGCCa -5' |
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28778 | 5' | -63.5 | NC_006146.1 | + | 170307 | 0.68 | 0.431617 |
Target: 5'- gGGGCaG-GGCUGGCgCCgGGCCGCGc- -3' miRNA: 3'- -CUCGaCuCCGACCG-GGaCCGGUGCca -5' |
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28778 | 5' | -63.5 | NC_006146.1 | + | 36904 | 0.67 | 0.503225 |
Target: 5'- gGGGUUGAGGCcuGCCUUGGUuaugCAUGGUg -3' miRNA: 3'- -CUCGACUCCGacCGGGACCG----GUGCCA- -5' |
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28778 | 5' | -63.5 | NC_006146.1 | + | 147108 | 0.68 | 0.414658 |
Target: 5'- cGAGCUGGGGCUcagcgGGCCCcagacgcgcaGGCCGCc-- -3' miRNA: 3'- -CUCGACUCCGA-----CCGGGa---------CCGGUGcca -5' |
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28778 | 5' | -63.5 | NC_006146.1 | + | 117884 | 0.69 | 0.390002 |
Target: 5'- uGGGCacccGAGGCUGGucaucgaccCCCgcGGCCACGGc -3' miRNA: 3'- -CUCGa---CUCCGACC---------GGGa-CCGGUGCCa -5' |
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28778 | 5' | -63.5 | NC_006146.1 | + | 157509 | 0.71 | 0.301413 |
Target: 5'- uGGCUGAGGCaguccgUGGCCgCgcagaccacggUGGUCGCGGUg -3' miRNA: 3'- cUCGACUCCG------ACCGG-G-----------ACCGGUGCCA- -5' |
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28778 | 5' | -63.5 | NC_006146.1 | + | 41605 | 0.72 | 0.263287 |
Target: 5'- aGGCccggGGGGCUGGUCCgcugGGCC-CGGg -3' miRNA: 3'- cUCGa---CUCCGACCGGGa---CCGGuGCCa -5' |
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28778 | 5' | -63.5 | NC_006146.1 | + | 167380 | 0.65 | 0.5883 |
Target: 5'- gGGGCUGAgggggcucccgagGGCggGGCCggGGCCugGCGGg -3' miRNA: 3'- -CUCGACU-------------CCGa-CCGGgaCCGG--UGCCa -5' |
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28778 | 5' | -63.5 | NC_006146.1 | + | 86308 | 0.66 | 0.579525 |
Target: 5'- uGGCUGgaguAGGa-GGCCCUGGgCAgGGUc -3' miRNA: 3'- cUCGAC----UCCgaCCGGGACCgGUgCCA- -5' |
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28778 | 5' | -63.5 | NC_006146.1 | + | 146845 | 0.66 | 0.550504 |
Target: 5'- aGAGCccGGGcCUGGCUCggGGCCGCGu- -3' miRNA: 3'- -CUCGacUCC-GACCGGGa-CCGGUGCca -5' |
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28778 | 5' | -63.5 | NC_006146.1 | + | 143235 | 0.66 | 0.538063 |
Target: 5'- uGAGCucUGggugccaagaaaccAGGCUGGCCCggugacgcUGGCC-CGGa -3' miRNA: 3'- -CUCG--AC--------------UCCGACCGGG--------ACCGGuGCCa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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