miRNA display CGI


Results 21 - 40 of 125 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28778 5' -63.5 NC_006146.1 + 46725 0.67 0.475715
Target:  5'- cGGCUccGAGGCgggcggaGGCCacgCUGGCCAgGGUc -3'
miRNA:   3'- cUCGA--CUCCGa------CCGG---GACCGGUgCCA- -5'
28778 5' -63.5 NC_006146.1 + 47240 0.71 0.308166
Target:  5'- uGAGCUGgcgcGGGUcgacgUGGcCCCUGGCC-CGGg -3'
miRNA:   3'- -CUCGAC----UCCG-----ACC-GGGACCGGuGCCa -5'
28778 5' -63.5 NC_006146.1 + 47745 0.74 0.180658
Target:  5'- -uGgaGGGGCUGGCCCUGGggACGGa -3'
miRNA:   3'- cuCgaCUCCGACCGGGACCggUGCCa -5'
28778 5' -63.5 NC_006146.1 + 49081 0.75 0.16394
Target:  5'- aGGGCUGAGGCUccGGCUgUGGCUcagGCGGc -3'
miRNA:   3'- -CUCGACUCCGA--CCGGgACCGG---UGCCa -5'
28778 5' -63.5 NC_006146.1 + 51847 0.68 0.466712
Target:  5'- gGGGCUcGGGGcCUGGCCC-GaGCC-CGGg -3'
miRNA:   3'- -CUCGA-CUCC-GACCGGGaC-CGGuGCCa -5'
28778 5' -63.5 NC_006146.1 + 52989 0.67 0.484804
Target:  5'- aGGCgGAccuGCcGGCCgUGGCCGCGGg -3'
miRNA:   3'- cUCGaCUc--CGaCCGGgACCGGUGCCa -5'
28778 5' -63.5 NC_006146.1 + 52990 0.69 0.369425
Target:  5'- cGGGCgucucGAGGCcccucuucUGGCCCugggccucacgcggcUGGCCGCGGc -3'
miRNA:   3'- -CUCGa----CUCCG--------ACCGGG---------------ACCGGUGCCa -5'
28778 5' -63.5 NC_006146.1 + 53326 0.73 0.213561
Target:  5'- cGAGCccGAGGa-GGCCCggcGGCCGCGGg -3'
miRNA:   3'- -CUCGa-CUCCgaCCGGGa--CCGGUGCCa -5'
28778 5' -63.5 NC_006146.1 + 53492 0.73 0.218661
Target:  5'- aGGGCcgGGGGUgcggucUGGCUCUGGCUGCGGg -3'
miRNA:   3'- -CUCGa-CUCCG------ACCGGGACCGGUGCCa -5'
28778 5' -63.5 NC_006146.1 + 56682 0.67 0.481159
Target:  5'- cGGGCccccUGGGGCUGGCCCUGcuggacaaccugaGCCucuacuuuugcaucAUGGUg -3'
miRNA:   3'- -CUCG----ACUCCGACCGGGAC-------------CGG--------------UGCCA- -5'
28778 5' -63.5 NC_006146.1 + 56821 0.71 0.294774
Target:  5'- gGGGCUucuggcccccGAGGC-GGCCuCUGGCgGCGGg -3'
miRNA:   3'- -CUCGA----------CUCCGaCCGG-GACCGgUGCCa -5'
28778 5' -63.5 NC_006146.1 + 57219 0.69 0.398114
Target:  5'- cGGGCcgGAGGCcgGGCCCgGGCC-CGa- -3'
miRNA:   3'- -CUCGa-CUCCGa-CCGGGaCCGGuGCca -5'
28778 5' -63.5 NC_006146.1 + 61391 0.67 0.475715
Target:  5'- uGAGCUaugGGGGUUGuCCCaggcUGGCUGCGGUg -3'
miRNA:   3'- -CUCGA---CUCCGACcGGG----ACCGGUGCCA- -5'
28778 5' -63.5 NC_006146.1 + 61925 0.76 0.145005
Target:  5'- cGGGCcaucaGGGGCUccagGGCCCUGGuCCACGGg -3'
miRNA:   3'- -CUCGa----CUCCGA----CCGGGACC-GGUGCCa -5'
28778 5' -63.5 NC_006146.1 + 67326 0.67 0.512549
Target:  5'- -cGCUGAGcCcGGCCCaGGCC-CGGg -3'
miRNA:   3'- cuCGACUCcGaCCGGGaCCGGuGCCa -5'
28778 5' -63.5 NC_006146.1 + 68857 0.66 0.569809
Target:  5'- -uGCUGgcaagcAGGCUGGCgacagCCUGGCCcugAUGGa -3'
miRNA:   3'- cuCGAC------UCCGACCG-----GGACCGG---UGCCa -5'
28778 5' -63.5 NC_006146.1 + 72338 0.66 0.540925
Target:  5'- uGGCaUGAGGCcuucgcuugGGCCCUGGaCCggcugGCGGc -3'
miRNA:   3'- cUCG-ACUCCGa--------CCGGGACC-GG-----UGCCa -5'
28778 5' -63.5 NC_006146.1 + 84089 0.69 0.406333
Target:  5'- cGGGCgagaaUGGGGCgGGCUCaUGGCCACGc- -3'
miRNA:   3'- -CUCG-----ACUCCGaCCGGG-ACCGGUGCca -5'
28778 5' -63.5 NC_006146.1 + 85910 0.66 0.579525
Target:  5'- aGAGCcgcGGGGCUuuacccuggGGCCUggaUGGCCuGCGGg -3'
miRNA:   3'- -CUCGa--CUCCGA---------CCGGG---ACCGG-UGCCa -5'
28778 5' -63.5 NC_006146.1 + 86308 0.66 0.579525
Target:  5'- uGGCUGgaguAGGa-GGCCCUGGgCAgGGUc -3'
miRNA:   3'- cUCGAC----UCCgaCCGGGACCgGUgCCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.