miRNA display CGI


Results 21 - 40 of 125 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28778 5' -63.5 NC_006146.1 + 92200 0.72 0.24011
Target:  5'- -uGCUGggGGGCgGGCCC-GGCCugGGg -3'
miRNA:   3'- cuCGAC--UCCGaCCGGGaCCGGugCCa -5'
28778 5' -63.5 NC_006146.1 + 139068 0.72 0.24574
Target:  5'- aGGGCgGAaGCUGGaCUUUGGCCACGGg -3'
miRNA:   3'- -CUCGaCUcCGACC-GGGACCGGUGCCa -5'
28778 5' -63.5 NC_006146.1 + 41605 0.72 0.263287
Target:  5'- aGGCccggGGGGCUGGUCCgcugGGCC-CGGg -3'
miRNA:   3'- cUCGa---CUCCGACCGGGa---CCGGuGCCa -5'
28778 5' -63.5 NC_006146.1 + 39982 0.72 0.263287
Target:  5'- aGGCUGAGGCUgcugcGGCCCguagUGGCCGgugUGGg -3'
miRNA:   3'- cUCGACUCCGA-----CCGGG----ACCGGU---GCCa -5'
28778 5' -63.5 NC_006146.1 + 40733 0.71 0.294774
Target:  5'- cGGGC--AGGCgGGCCCgugcuuggggcUGGCCACGGa -3'
miRNA:   3'- -CUCGacUCCGaCCGGG-----------ACCGGUGCCa -5'
28778 5' -63.5 NC_006146.1 + 56821 0.71 0.294774
Target:  5'- gGGGCUucuggcccccGAGGC-GGCCuCUGGCgGCGGg -3'
miRNA:   3'- -CUCGA----------CUCCGaCCGG-GACCGgUGCCa -5'
28778 5' -63.5 NC_006146.1 + 157509 0.71 0.301413
Target:  5'- uGGCUGAGGCaguccgUGGCCgCgcagaccacggUGGUCGCGGUg -3'
miRNA:   3'- cUCGACUCCG------ACCGG-G-----------ACCGGUGCCA- -5'
28778 5' -63.5 NC_006146.1 + 47240 0.71 0.308166
Target:  5'- uGAGCUGgcgcGGGUcgacgUGGcCCCUGGCC-CGGg -3'
miRNA:   3'- -CUCGAC----UCCG-----ACC-GGGACCGGuGCCa -5'
28778 5' -63.5 NC_006146.1 + 14819 0.7 0.322723
Target:  5'- cGGGCcgGAGGagggcacggucucgGGCCCggGGCCGCGGg -3'
miRNA:   3'- -CUCGa-CUCCga------------CCGGGa-CCGGUGCCa -5'
28778 5' -63.5 NC_006146.1 + 95740 0.7 0.33633
Target:  5'- cAGUggggGGGGCUGGUgUUGGCCcCGGUu -3'
miRNA:   3'- cUCGa---CUCCGACCGgGACCGGuGCCA- -5'
28778 5' -63.5 NC_006146.1 + 128326 0.7 0.358656
Target:  5'- cGGGCUGGuccuGCUGGCCCUGgagaugaaGCCgACGGa -3'
miRNA:   3'- -CUCGACUc---CGACCGGGAC--------CGG-UGCCa -5'
28778 5' -63.5 NC_006146.1 + 52990 0.69 0.369425
Target:  5'- cGGGCgucucGAGGCcccucuucUGGCCCugggccucacgcggcUGGCCGCGGc -3'
miRNA:   3'- -CUCGa----CUCCG--------ACCGGG---------------ACCGGUGCCa -5'
28778 5' -63.5 NC_006146.1 + 122620 0.69 0.377251
Target:  5'- gGGGCggagGAGGCcggGGCCCUcuuucgcgccaggacGGCgGCGGg -3'
miRNA:   3'- -CUCGa---CUCCGa--CCGGGA---------------CCGgUGCCa -5'
28778 5' -63.5 NC_006146.1 + 117884 0.69 0.390002
Target:  5'- uGGGCacccGAGGCUGGucaucgaccCCCgcGGCCACGGc -3'
miRNA:   3'- -CUCGa---CUCCGACC---------GGGa-CCGGUGCCa -5'
28778 5' -63.5 NC_006146.1 + 57219 0.69 0.398114
Target:  5'- cGGGCcgGAGGCcgGGCCCgGGCC-CGa- -3'
miRNA:   3'- -CUCGa-CUCCGa-CCGGGaCCGGuGCca -5'
28778 5' -63.5 NC_006146.1 + 147682 0.69 0.406333
Target:  5'- cGGGCcuggGAGGCUGGUUCUGGgCugGa- -3'
miRNA:   3'- -CUCGa---CUCCGACCGGGACCgGugCca -5'
28778 5' -63.5 NC_006146.1 + 11862 0.69 0.406333
Target:  5'- cGGGCuUGGGGCgGGCCCgacguugacUGGCaccaACGGg -3'
miRNA:   3'- -CUCG-ACUCCGaCCGGG---------ACCGg---UGCCa -5'
28778 5' -63.5 NC_006146.1 + 84089 0.69 0.406333
Target:  5'- cGGGCgagaaUGGGGCgGGCUCaUGGCCACGc- -3'
miRNA:   3'- -CUCG-----ACUCCGaCCGGG-ACCGGUGCca -5'
28778 5' -63.5 NC_006146.1 + 165094 0.69 0.406333
Target:  5'- aGAGCUGGGaCUGGCCCaGaCUAUGGUc -3'
miRNA:   3'- -CUCGACUCcGACCGGGaCcGGUGCCA- -5'
28778 5' -63.5 NC_006146.1 + 116986 0.68 0.414658
Target:  5'- gGAGCUcaacGAGcGCguggagcgGGCCCUGGaCCugGGc -3'
miRNA:   3'- -CUCGA----CUC-CGa-------CCGGGACC-GGugCCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.