miRNA display CGI


Results 1 - 20 of 125 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28778 5' -63.5 NC_006146.1 + 123494 1.05 0.001003
Target:  5'- gGAGCUGAGGCUGGCCCUGGCCACGGUc -3'
miRNA:   3'- -CUCGACUCCGACCGGGACCGGUGCCA- -5'
28778 5' -63.5 NC_006146.1 + 120547 0.78 0.107459
Target:  5'- -uGCUGgccaagauccccAGGCUGGCCgaGGCCGCGGa -3'
miRNA:   3'- cuCGAC------------UCCGACCGGgaCCGGUGCCa -5'
28778 5' -63.5 NC_006146.1 + 145862 0.76 0.134624
Target:  5'- uGGGCUGGucucgcuuGCUGGCCCcaaUGGCCGCGGg -3'
miRNA:   3'- -CUCGACUc-------CGACCGGG---ACCGGUGCCa -5'
28778 5' -63.5 NC_006146.1 + 158175 0.76 0.134624
Target:  5'- uGGGCUGGucucgcuuGCUGGCCCcaaUGGCCGCGGg -3'
miRNA:   3'- -CUCGACUc-------CGACCGGG---ACCGGUGCCa -5'
28778 5' -63.5 NC_006146.1 + 142784 0.76 0.134624
Target:  5'- uGGGCUGGucucgcuuGCUGGCCCcaaUGGCCGCGGg -3'
miRNA:   3'- -CUCGACUc-------CGACCGGG---ACCGGUGCCa -5'
28778 5' -63.5 NC_006146.1 + 152018 0.76 0.134624
Target:  5'- uGGGCUGGucucgcuuGCUGGCCCcaaUGGCCGCGGg -3'
miRNA:   3'- -CUCGACUc-------CGACCGGG---ACCGGUGCCa -5'
28778 5' -63.5 NC_006146.1 + 155096 0.76 0.134624
Target:  5'- uGGGCUGGucucgcuuGCUGGCCCcaaUGGCCGCGGg -3'
miRNA:   3'- -CUCGACUc-------CGACCGGG---ACCGGUGCCa -5'
28778 5' -63.5 NC_006146.1 + 148940 0.76 0.134624
Target:  5'- uGGGCUGGucucgcuuGCUGGCCCcaaUGGCCGCGGg -3'
miRNA:   3'- -CUCGACUc-------CGACCGGG---ACCGGUGCCa -5'
28778 5' -63.5 NC_006146.1 + 61925 0.76 0.145005
Target:  5'- cGGGCcaucaGGGGCUccagGGCCCUGGuCCACGGg -3'
miRNA:   3'- -CUCGa----CUCCGA----CCGGGACC-GGUGCCa -5'
28778 5' -63.5 NC_006146.1 + 49081 0.75 0.16394
Target:  5'- aGGGCUGAGGCUccGGCUgUGGCUcagGCGGc -3'
miRNA:   3'- -CUCGACUCCGA--CCGGgACCGG---UGCCa -5'
28778 5' -63.5 NC_006146.1 + 47745 0.74 0.180658
Target:  5'- -uGgaGGGGCUGGCCCUGGggACGGa -3'
miRNA:   3'- cuCgaCUCCGACCGGGACCggUGCCa -5'
28778 5' -63.5 NC_006146.1 + 95522 0.74 0.194172
Target:  5'- gGAGCUGucGGGUgcGGCgCCUGGCCAgGGUc -3'
miRNA:   3'- -CUCGAC--UCCGa-CCG-GGACCGGUgCCA- -5'
28778 5' -63.5 NC_006146.1 + 53326 0.73 0.213561
Target:  5'- cGAGCccGAGGa-GGCCCggcGGCCGCGGg -3'
miRNA:   3'- -CUCGa-CUCCgaCCGGGa--CCGGUGCCa -5'
28778 5' -63.5 NC_006146.1 + 92162 0.73 0.213561
Target:  5'- gGGGCUGcugcugggGGGCgGGCCC-GGCCugGGg -3'
miRNA:   3'- -CUCGAC--------UCCGaCCGGGaCCGGugCCa -5'
28778 5' -63.5 NC_006146.1 + 92013 0.73 0.213561
Target:  5'- gGGGCUGcugcugggGGGCgGGCCC-GGCCugGGg -3'
miRNA:   3'- -CUCGAC--------UCCGaCCGGGaCCGGugCCa -5'
28778 5' -63.5 NC_006146.1 + 92282 0.73 0.213561
Target:  5'- gGGGCUGcugcugggGGGCgGGCCC-GGCCugGGg -3'
miRNA:   3'- -CUCGAC--------UCCGaCCGGGaCCGGugCCa -5'
28778 5' -63.5 NC_006146.1 + 92102 0.73 0.213561
Target:  5'- gGGGCUGcugcugggGGGCgGGCCC-GGCCugGGg -3'
miRNA:   3'- -CUCGAC--------UCCGaCCGGGaCCGGugCCa -5'
28778 5' -63.5 NC_006146.1 + 53492 0.73 0.218661
Target:  5'- aGGGCcgGGGGUgcggucUGGCUCUGGCUGCGGg -3'
miRNA:   3'- -CUCGa-CUCCG------ACCGGGACCGGUGCCa -5'
28778 5' -63.5 NC_006146.1 + 92200 0.72 0.24011
Target:  5'- -uGCUGggGGGCgGGCCC-GGCCugGGg -3'
miRNA:   3'- cuCGAC--UCCGaCCGGGaCCGGugCCa -5'
28778 5' -63.5 NC_006146.1 + 92051 0.72 0.24011
Target:  5'- -uGCUGggGGGCgGGCCC-GGCCugGGg -3'
miRNA:   3'- cuCGAC--UCCGaCCGGGaCCGGugCCa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.