miRNA display CGI


Results 1 - 20 of 125 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28778 5' -63.5 NC_006146.1 + 5214 0.66 0.579525
Target:  5'- gGAGCUaGGGGUgcaGGUCCUugccGGCCuCGGg -3'
miRNA:   3'- -CUCGA-CUCCGa--CCGGGA----CCGGuGCCa -5'
28778 5' -63.5 NC_006146.1 + 6407 0.66 0.531404
Target:  5'- uGGGCcaUGGGGUcccuuUGGCCCagGGCCAUGuGg -3'
miRNA:   3'- -CUCG--ACUCCG-----ACCGGGa-CCGGUGC-Ca -5'
28778 5' -63.5 NC_006146.1 + 11862 0.69 0.406333
Target:  5'- cGGGCuUGGGGCgGGCCCgacguugacUGGCaccaACGGg -3'
miRNA:   3'- -CUCG-ACUCCGaCCGGG---------ACCGg---UGCCa -5'
28778 5' -63.5 NC_006146.1 + 14819 0.7 0.322723
Target:  5'- cGGGCcgGAGGagggcacggucucgGGCCCggGGCCGCGGg -3'
miRNA:   3'- -CUCGa-CUCCga------------CCGGGa-CCGGUGCCa -5'
28778 5' -63.5 NC_006146.1 + 15417 0.66 0.560133
Target:  5'- uGGCcucagaGGGGCUGGCCC-GGCUGCaGUc -3'
miRNA:   3'- cUCGa-----CUCCGACCGGGaCCGGUGcCA- -5'
28778 5' -63.5 NC_006146.1 + 17591 0.68 0.466712
Target:  5'- -uGCUGGGcgacCUGGCCCgGGCC-UGGUg -3'
miRNA:   3'- cuCGACUCc---GACCGGGaCCGGuGCCA- -5'
28778 5' -63.5 NC_006146.1 + 20211 0.66 0.531404
Target:  5'- aGGCUGGGcauguacugcguGCaggauucGGCCCUGGUCAUGGa -3'
miRNA:   3'- cUCGACUC------------CGa------CCGGGACCGGUGCCa -5'
28778 5' -63.5 NC_006146.1 + 23461 0.68 0.448975
Target:  5'- cGGCcuacGAGGCccUGGCCgUGGCCA-GGUa -3'
miRNA:   3'- cUCGa---CUCCG--ACCGGgACCGGUgCCA- -5'
28778 5' -63.5 NC_006146.1 + 32979 0.66 0.563999
Target:  5'- -cGCUGGgucgcGGCUgcccccggaacccccGGCCCUGuCCACGGg -3'
miRNA:   3'- cuCGACU-----CCGA---------------CCGGGACcGGUGCCa -5'
28778 5' -63.5 NC_006146.1 + 36904 0.67 0.503225
Target:  5'- gGGGUUGAGGCcuGCCUUGGUuaugCAUGGUg -3'
miRNA:   3'- -CUCGACUCCGacCGGGACCG----GUGCCA- -5'
28778 5' -63.5 NC_006146.1 + 38944 0.68 0.466712
Target:  5'- aAGCggucGAGGgUGGCCUUGGCaucCGGg -3'
miRNA:   3'- cUCGa---CUCCgACCGGGACCGgu-GCCa -5'
28778 5' -63.5 NC_006146.1 + 39654 0.68 0.466712
Target:  5'- uGGGCUGAGaCU-GCCUUGGCCuuGGa -3'
miRNA:   3'- -CUCGACUCcGAcCGGGACCGGugCCa -5'
28778 5' -63.5 NC_006146.1 + 39764 0.67 0.503225
Target:  5'- aGGCUGGGGCUuggagucaGGCUUgGGCC-CGGa -3'
miRNA:   3'- cUCGACUCCGA--------CCGGGaCCGGuGCCa -5'
28778 5' -63.5 NC_006146.1 + 39884 0.67 0.503225
Target:  5'- aGGCUGAGGCUGaGC---GGCCuGCGGg -3'
miRNA:   3'- cUCGACUCCGAC-CGggaCCGG-UGCCa -5'
28778 5' -63.5 NC_006146.1 + 39982 0.72 0.263287
Target:  5'- aGGCUGAGGCUgcugcGGCCCguagUGGCCGgugUGGg -3'
miRNA:   3'- cUCGACUCCGA-----CCGGG----ACCGGU---GCCa -5'
28778 5' -63.5 NC_006146.1 + 40733 0.71 0.294774
Target:  5'- cGGGC--AGGCgGGCCCgugcuuggggcUGGCCACGGa -3'
miRNA:   3'- -CUCGacUCCGaCCGGG-----------ACCGGUGCCa -5'
28778 5' -63.5 NC_006146.1 + 40845 0.67 0.512549
Target:  5'- gGGGCagGGGGCgcucuuggaGGCCC-GGCuCGCGGUc -3'
miRNA:   3'- -CUCGa-CUCCGa--------CCGGGaCCG-GUGCCA- -5'
28778 5' -63.5 NC_006146.1 + 41605 0.72 0.263287
Target:  5'- aGGCccggGGGGCUGGUCCgcugGGCC-CGGg -3'
miRNA:   3'- cUCGa---CUCCGACCGGGa---CCGGuGCCa -5'
28778 5' -63.5 NC_006146.1 + 42678 0.67 0.493054
Target:  5'- aGAGCUccccgcgccgaaaGAGcGuCUGGCCCgGcGCCGCGGc -3'
miRNA:   3'- -CUCGA-------------CUC-C-GACCGGGaC-CGGUGCCa -5'
28778 5' -63.5 NC_006146.1 + 43716 0.67 0.521943
Target:  5'- cGAGCgUGAGGCUauaacgcauGUCCUGGUCGgGGg -3'
miRNA:   3'- -CUCG-ACUCCGAc--------CGGGACCGGUgCCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.