miRNA display CGI


Results 1 - 20 of 125 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28778 5' -63.5 NC_006146.1 + 170307 0.68 0.431617
Target:  5'- gGGGCaG-GGCUGGCgCCgGGCCGCGc- -3'
miRNA:   3'- -CUCGaCuCCGACCG-GGaCCGGUGCca -5'
28778 5' -63.5 NC_006146.1 + 170175 0.65 0.5883
Target:  5'- gGGGCUGAgggggcucccgagGGCggGGCCggGGCCugGCGGg -3'
miRNA:   3'- -CUCGACU-------------CCGa-CCGGgaCCGG--UGCCa -5'
28778 5' -63.5 NC_006146.1 + 169376 0.68 0.431617
Target:  5'- gGGGCaG-GGCUGGCgCCgGGCCGCGc- -3'
miRNA:   3'- -CUCGaCuCCGACCG-GGaCCGGUGCca -5'
28778 5' -63.5 NC_006146.1 + 169244 0.65 0.5883
Target:  5'- gGGGCUGAgggggcucccgagGGCggGGCCggGGCCugGCGGg -3'
miRNA:   3'- -CUCGACU-------------CCGa-CCGGgaCCGG--UGCCa -5'
28778 5' -63.5 NC_006146.1 + 168444 0.68 0.431617
Target:  5'- gGGGCaG-GGCUGGCgCCgGGCCGCGc- -3'
miRNA:   3'- -CUCGaCuCCGACCG-GGaCCGGUGCca -5'
28778 5' -63.5 NC_006146.1 + 168312 0.65 0.5883
Target:  5'- gGGGCUGAgggggcucccgagGGCggGGCCggGGCCugGCGGg -3'
miRNA:   3'- -CUCGACU-------------CCGa-CCGGgaCCGG--UGCCa -5'
28778 5' -63.5 NC_006146.1 + 167512 0.68 0.431617
Target:  5'- gGGGCaG-GGCUGGCgCCgGGCCGCGc- -3'
miRNA:   3'- -CUCGaCuCCGACCG-GGaCCGGUGCca -5'
28778 5' -63.5 NC_006146.1 + 167380 0.65 0.5883
Target:  5'- gGGGCUGAgggggcucccgagGGCggGGCCggGGCCugGCGGg -3'
miRNA:   3'- -CUCGACU-------------CCGa-CCGGgaCCGG--UGCCa -5'
28778 5' -63.5 NC_006146.1 + 165810 0.66 0.531404
Target:  5'- cGGCUaggGGGGCgu-CCCUGGCCGCGuGg -3'
miRNA:   3'- cUCGA---CUCCGaccGGGACCGGUGC-Ca -5'
28778 5' -63.5 NC_006146.1 + 165094 0.69 0.406333
Target:  5'- aGAGCUGGGaCUGGCCCaGaCUAUGGUc -3'
miRNA:   3'- -CUCGACUCcGACCGGGaCcGGUGCCA- -5'
28778 5' -63.5 NC_006146.1 + 161757 0.67 0.493975
Target:  5'- cGGCUGAGGUccgagggGGCgCCUGGgCGgGGg -3'
miRNA:   3'- cUCGACUCCGa------CCG-GGACCgGUgCCa -5'
28778 5' -63.5 NC_006146.1 + 158581 0.67 0.503225
Target:  5'- gGGGaCUGAGGCgGGCCUgaaGCC-CGGg -3'
miRNA:   3'- -CUC-GACUCCGaCCGGGac-CGGuGCCa -5'
28778 5' -63.5 NC_006146.1 + 158261 0.66 0.538063
Target:  5'- uAGUuaUGGGGcCUGGCcgggucuaagguggCCUGGCCugGGc -3'
miRNA:   3'- cUCG--ACUCC-GACCG--------------GGACCGGugCCa -5'
28778 5' -63.5 NC_006146.1 + 158175 0.76 0.134624
Target:  5'- uGGGCUGGucucgcuuGCUGGCCCcaaUGGCCGCGGg -3'
miRNA:   3'- -CUCGACUc-------CGACCGGG---ACCGGUGCCa -5'
28778 5' -63.5 NC_006146.1 + 157509 0.71 0.301413
Target:  5'- uGGCUGAGGCaguccgUGGCCgCgcagaccacggUGGUCGCGGUg -3'
miRNA:   3'- cUCGACUCCG------ACCGG-G-----------ACCGGUGCCA- -5'
28778 5' -63.5 NC_006146.1 + 156915 0.67 0.511613
Target:  5'- cGGGCcuggGAGGCUGGUUCUGGggcuggaCUugGGa -3'
miRNA:   3'- -CUCGa---CUCCGACCGGGACC-------GGugCCa -5'
28778 5' -63.5 NC_006146.1 + 156690 0.67 0.493975
Target:  5'- cGGCUGggggucGGGCUGGCCU--GCCAgGGg -3'
miRNA:   3'- cUCGAC------UCCGACCGGGacCGGUgCCa -5'
28778 5' -63.5 NC_006146.1 + 155864 0.67 0.512549
Target:  5'- aGGCcc-GGCgGGCCCUGGCCA-GGc -3'
miRNA:   3'- cUCGacuCCGaCCGGGACCGGUgCCa -5'
28778 5' -63.5 NC_006146.1 + 155502 0.67 0.503225
Target:  5'- gGGGaCUGAGGCgGGCCUgaaGCC-CGGg -3'
miRNA:   3'- -CUC-GACUCCGaCCGGGac-CGGuGCCa -5'
28778 5' -63.5 NC_006146.1 + 155182 0.66 0.538063
Target:  5'- uAGUuaUGGGGcCUGGCcgggucuaagguggCCUGGCCugGGc -3'
miRNA:   3'- cUCG--ACUCC-GACCG--------------GGACCGGugCCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.