miRNA display CGI


Results 41 - 60 of 192 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28779 3' -62.9 NC_006146.1 + 170596 0.66 0.66276
Target:  5'- -gCUGGGCGugGCGAGCgcgCCGGGCccGCc- -3'
miRNA:   3'- ggGGCCUGC--UGCUCGa--GGCCCG--CGac -5'
28779 3' -62.9 NC_006146.1 + 5200 0.66 0.66276
Target:  5'- uCCCUGGGCcugGGgGAGCUagGGGUGCa- -3'
miRNA:   3'- -GGGGCCUG---CUgCUCGAggCCCGCGac -5'
28779 3' -62.9 NC_006146.1 + 128179 0.66 0.66276
Target:  5'- gCCCGGAUccGCG-GCUgCCagcccgagcGGGCGCUGg -3'
miRNA:   3'- gGGGCCUGc-UGCuCGA-GG---------CCCGCGAC- -5'
28779 3' -62.9 NC_006146.1 + 55263 0.66 0.66276
Target:  5'- gCCCGGGCGAagcGGCUCgUGGG-GCUc -3'
miRNA:   3'- gGGGCCUGCUgc-UCGAG-GCCCgCGAc -5'
28779 3' -62.9 NC_006146.1 + 155139 0.66 0.653216
Target:  5'- uCCCCGcGGCGuCGcAGCagCGGGCcagggccacguuGCUGg -3'
miRNA:   3'- -GGGGC-CUGCuGC-UCGagGCCCG------------CGAC- -5'
28779 3' -62.9 NC_006146.1 + 155942 0.66 0.653216
Target:  5'- gCCgGcGAUGACGguggagguGGCcCCGGGCGCa- -3'
miRNA:   3'- gGGgC-CUGCUGC--------UCGaGGCCCGCGac -5'
28779 3' -62.9 NC_006146.1 + 152864 0.66 0.653216
Target:  5'- gCCgGcGAUGACGguggagguGGCcCCGGGCGCa- -3'
miRNA:   3'- gGGgC-CUGCUGC--------UCGaGGCCCGCGac -5'
28779 3' -62.9 NC_006146.1 + 149786 0.66 0.653216
Target:  5'- gCCgGcGAUGACGguggagguGGCcCCGGGCGCa- -3'
miRNA:   3'- gGGgC-CUGCUGC--------UCGaGGCCCGCGac -5'
28779 3' -62.9 NC_006146.1 + 146708 0.66 0.653216
Target:  5'- gCCgGcGAUGACGguggagguGGCcCCGGGCGCa- -3'
miRNA:   3'- gGGgC-CUGCUGC--------UCGaGGCCCGCGac -5'
28779 3' -62.9 NC_006146.1 + 143631 0.66 0.653216
Target:  5'- gCCgGcGAUGACGguggagguGGCcCCGGGCGCa- -3'
miRNA:   3'- gGGgC-CUGCUGC--------UCGaGGCCCGCGac -5'
28779 3' -62.9 NC_006146.1 + 57410 0.66 0.653216
Target:  5'- gCCCGGcCGACGcacGCcucuaCGuGGCGCUGa -3'
miRNA:   3'- gGGGCCuGCUGCu--CGag---GC-CCGCGAC- -5'
28779 3' -62.9 NC_006146.1 + 144701 0.66 0.643658
Target:  5'- gCCUGGA-GGCGAGa-CUGGGCgGCUGc -3'
miRNA:   3'- gGGGCCUgCUGCUCgaGGCCCG-CGAC- -5'
28779 3' -62.9 NC_006146.1 + 33437 0.66 0.643658
Target:  5'- gCUCGGuCcugGGGCUCCGGGUGCa- -3'
miRNA:   3'- gGGGCCuGcugCUCGAGGCCCGCGac -5'
28779 3' -62.9 NC_006146.1 + 8431 0.66 0.643658
Target:  5'- aCCCUGGG-GACcaggaGAGCUCgGGGgcgaGCUGa -3'
miRNA:   3'- -GGGGCCUgCUG-----CUCGAGgCCCg---CGAC- -5'
28779 3' -62.9 NC_006146.1 + 142328 0.66 0.643658
Target:  5'- gCCCGGAgCGAggcCGGGCaggCCGGGCa--- -3'
miRNA:   3'- gGGGCCU-GCU---GCUCGa--GGCCCGcgac -5'
28779 3' -62.9 NC_006146.1 + 145406 0.66 0.643658
Target:  5'- gCCCGGAgCGAggcCGGGCaggCCGGGCa--- -3'
miRNA:   3'- gGGGCCU-GCU---GCUCGa--GGCCCGcgac -5'
28779 3' -62.9 NC_006146.1 + 148484 0.66 0.643658
Target:  5'- gCCCGGAgCGAggcCGGGCaggCCGGGCa--- -3'
miRNA:   3'- gGGGCCU-GCU---GCUCGa--GGCCCGcgac -5'
28779 3' -62.9 NC_006146.1 + 151562 0.66 0.643658
Target:  5'- gCCCGGAgCGAggcCGGGCaggCCGGGCa--- -3'
miRNA:   3'- gGGGCCU-GCU---GCUCGa--GGCCCGcgac -5'
28779 3' -62.9 NC_006146.1 + 154640 0.66 0.643658
Target:  5'- gCCCGGAgCGAggcCGGGCaggCCGGGCa--- -3'
miRNA:   3'- gGGGCCU-GCU---GCUCGa--GGCCCGcgac -5'
28779 3' -62.9 NC_006146.1 + 157717 0.66 0.643658
Target:  5'- gCCCGGAgCGAggcCGGGCaggCCGGGCa--- -3'
miRNA:   3'- gGGGCCU-GCU---GCUCGa--GGCCCGcgac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.