miRNA display CGI


Results 1 - 20 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28779 5' -56.9 NC_006146.1 + 378 0.66 0.874129
Target:  5'- -gCCGCGCCCccucAGGcCCcgCCcgCCGCGc -3'
miRNA:   3'- aaGGUGCGGG----UUCaGGa-GGuaGGUGC- -5'
28779 5' -56.9 NC_006146.1 + 3920 0.67 0.827205
Target:  5'- -aCCGCGCCCAGccacugccccGUCCUCUAuuUCCcCu -3'
miRNA:   3'- aaGGUGCGGGUU----------CAGGAGGU--AGGuGc -5'
28779 5' -56.9 NC_006146.1 + 4799 0.72 0.564875
Target:  5'- uUUCUGCGCCCGGGgcgCCUCaaccgAUCCAUGc -3'
miRNA:   3'- -AAGGUGCGGGUUCa--GGAGg----UAGGUGC- -5'
28779 5' -56.9 NC_006146.1 + 6688 0.7 0.68638
Target:  5'- --aCAaugGCCCGgauAGUCCUCCAUCCAa- -3'
miRNA:   3'- aagGUg--CGGGU---UCAGGAGGUAGGUgc -5'
28779 5' -56.9 NC_006146.1 + 12367 0.77 0.297493
Target:  5'- cUCCGCGUCCccGUCCUCCAgagUCACGg -3'
miRNA:   3'- aAGGUGCGGGuuCAGGAGGUa--GGUGC- -5'
28779 5' -56.9 NC_006146.1 + 13298 0.66 0.881235
Target:  5'- gUCCGCcUCCAGgcGUCCUCCuggucUCCGCu -3'
miRNA:   3'- aAGGUGcGGGUU--CAGGAGGu----AGGUGc -5'
28779 5' -56.9 NC_006146.1 + 14011 0.73 0.477321
Target:  5'- gUCCACucgcCCCGAGUCCagccCCGUCCACc -3'
miRNA:   3'- aAGGUGc---GGGUUCAGGa---GGUAGGUGc -5'
28779 5' -56.9 NC_006146.1 + 14056 0.69 0.726156
Target:  5'- -gCCAgGCCCuccGUCCUCCcuggCCACu -3'
miRNA:   3'- aaGGUgCGGGuu-CAGGAGGua--GGUGc -5'
28779 5' -56.9 NC_006146.1 + 15446 0.77 0.297493
Target:  5'- cUCCGCGUCCccGUCCUCCAgagUCACGg -3'
miRNA:   3'- aAGGUGCGGGuuCAGGAGGUa--GGUGC- -5'
28779 5' -56.9 NC_006146.1 + 16294 0.7 0.666191
Target:  5'- cUUCCGCGUCUgcGAGcUCUCCAgCCACGg -3'
miRNA:   3'- -AAGGUGCGGG--UUCaGGAGGUaGGUGC- -5'
28779 5' -56.9 NC_006146.1 + 16376 0.66 0.881235
Target:  5'- gUCCGCcUCCAGgcGUCCUCCuggucUCCGCu -3'
miRNA:   3'- aAGGUGcGGGUU--CAGGAGGu----AGGUGc -5'
28779 5' -56.9 NC_006146.1 + 17089 0.73 0.477321
Target:  5'- gUCCACucgcCCCGAGUCCagccCCGUCCACc -3'
miRNA:   3'- aAGGUGc---GGGUUCAGGa---GGUAGGUGc -5'
28779 5' -56.9 NC_006146.1 + 17134 0.69 0.726156
Target:  5'- -gCCAgGCCCuccGUCCUCCcuggCCACu -3'
miRNA:   3'- aaGGUgCGGGuu-CAGGAGGua--GGUGc -5'
28779 5' -56.9 NC_006146.1 + 17380 0.75 0.414103
Target:  5'- -cCCACGCCCccca-CUCCAUCCACa -3'
miRNA:   3'- aaGGUGCGGGuucagGAGGUAGGUGc -5'
28779 5' -56.9 NC_006146.1 + 18027 0.68 0.771211
Target:  5'- -cCUGCGCCCGGGgccaCCUCCAccgucaucgccggcUCCGCc -3'
miRNA:   3'- aaGGUGCGGGUUCa---GGAGGU--------------AGGUGc -5'
28779 5' -56.9 NC_006146.1 + 18524 0.77 0.297493
Target:  5'- cUCCGCGUCCccGUCCUCCAgagUCACGg -3'
miRNA:   3'- aAGGUGCGGGuuCAGGAGGUa--GGUGC- -5'
28779 5' -56.9 NC_006146.1 + 19454 0.66 0.881235
Target:  5'- gUCCGCcUCCAGgcGUCCUCCuggucUCCGCu -3'
miRNA:   3'- aAGGUGcGGGUU--CAGGAGGu----AGGUGc -5'
28779 5' -56.9 NC_006146.1 + 20167 0.73 0.477321
Target:  5'- gUCCACucgcCCCGAGUCCagccCCGUCCACc -3'
miRNA:   3'- aAGGUGc---GGGUUCAGGa---GGUAGGUGc -5'
28779 5' -56.9 NC_006146.1 + 20212 0.69 0.726156
Target:  5'- -gCCAgGCCCuccGUCCUCCcuggCCACu -3'
miRNA:   3'- aaGGUgCGGGuu-CAGGAGGua--GGUGc -5'
28779 5' -56.9 NC_006146.1 + 21105 0.68 0.771211
Target:  5'- -cCUGCGCCCGGGgccaCCUCCAccgucaucgccggcUCCGCc -3'
miRNA:   3'- aaGGUGCGGGUUCa---GGAGGU--------------AGGUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.